Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq102257 170 5e-40 seq143330 140 8e-31 seq143329 118 3e-24 seq233047 104 6e-20 seq116444 75.2 3e-11 seq2289 75.2 3e-11 >seq102257 Length=583 Score = 170 bits (188), Expect = 5e-40 Identities = 187/246 (76%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 166 GACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATG 225 |||| |||| ||| || | ||||||||| ||||||| |||||||||| |||||| Sbjct 489 GACTTGAGTACTACAGGGGAGACTGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATC 430 Query 226 TGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAA 285 ||||||||||| |||||||||| | | ||||| ||||||||| | | ||||| Sbjct 429 AGGAGGAACACCGGTGGCGAAGGCGGGTCTCTGGGTAGTAACTGACGCTGAGGAGCGAAA 370 Query 286 GCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTA 345 ||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 369 GCGTGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTA 310 Query 346 GTTGTT-GGGGATTTACTTCC-TTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGG 403 |||| | || ||| | || || || | ||| ||||| | ||| ||||||||| Sbjct 309 AGTGTTAGAGGGTTTCCGCCCTTTAGTGCTGCAGCAAACGCATTAAGCACTCCGCCTGGG 250 Query 404 GAATAC 409 || ||| Sbjct 249 GAGTAC 244 >seq143330 Length=138 Score = 140 bits (154), Expect = 8e-31 Identities = 104/122 (85%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 |||| |||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 17 AAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCG 76 Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGG 134 |||||| ||||||||||||| |||||||||||| |||| | | |||| || |||| || Sbjct 77 GAATTATTGGGCGTAAAGCGCGCGCAGGCGGTTTCTTAAGTCTGATGTGGAAGCCCCCGG 136 Query 135 CT 136 || Sbjct 137 CT 138 >seq143329 Length=135 Score = 118 bits (130), Expect = 3e-24 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 112 AAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAG 171 ||| | | ||||||| |||| |||| |||| |||| |||| | |||| ||| | Sbjct 135 AAGTCTGATGTGAAAGCCCCCGGCTCAACCGGGGAGGGTCATTGGAAACTGGGGAACTTG 76 Query 172 AGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGG 231 |||| ||||| | ||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 75 AGTGCAGAAGAGGAGAGTGGAATTCCACGTGTAGCGGTGAAATGCGTAGAGATGTGGAGG 16 Query 232 AACACCAATGGCGAA 246 ||||||| ||||||| Sbjct 15 AACACCAGTGGCGAA 1 >seq233047 Length=482 Score = 104 bits (114), Expect = 6e-20 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 74 TACCTGGAGAAGAAGCACCGGCCAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 15 Query 63 AAGCGTT 69 |||||| Sbjct 14 GAGCGTT 8 >seq116444 Length=81 Score = 75.2 bits (82), Expect = 3e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 35 CCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCG 94 |||||||||||||||||||| ||| |||||||||| || | ||||||||||||||| Sbjct 1 CCAGCAGCCGCGGTAATACGGGGGGGGCAAGCGTTATTCACTTTAACTGGGCGTAAAGCG 60 Query 95 TGCGCAGGCGG 105 | | |||||| Sbjct 61 TCTGTAGGCGG 71 >seq2289 Length=88 Score = 75.2 bits (82), Expect = 3e-11 Identities = 69/86 (80%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 229 AGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCG 288 ||||| ||||| |||||||||| | | |||| || |||||||||| ||||| ||| Sbjct 85 AGGAATACCAAAGGCGAAGGCAACTCTCTGGC-TATGTCTGACGCTCAGAGACGAAGGCG 27 Query 289 TGGGGAGCAAACAGGATTAGATACCC 314 ||||||||||| ||||||| ||||| Sbjct 26 TGGGGAGCAAATGGGATTAGGTACCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1285576667232