Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq102257 358 2e-96 seq84962 149 2e-33 seq288409 141 3e-31 seq112294 98.7 3e-18 seq143115 84.2 7e-14 >seq102257 Length=583 Score = 358 bits (396), Expect = 2e-96 Identities = 229/247 (93%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 246 TACGGTCGCAAGACTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 187 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||||||||||||||||||||||||| ||||||||||||||| | | | Sbjct 186 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTCTGGCAACCC 127 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 ||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 126 TAGAGATAG-GGCTTCCCCTTCGGGGG-CAGAGTGACAGGTGGTGCATGGTTGTCGTCAG 69 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 68 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGATCTTAGTTGC 9 Query 241 CATCATT 247 || |||| Sbjct 8 CAGCATT 2 >seq84962 Length=188 Score = 149 bits (164), Expect = 2e-33 Identities = 118/139 (85%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| | |||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 50 TACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCAT 109 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATC-CTCTGACCCCT 119 |||| ||||||||| |||||||||||||||||||| |||||||| | |||| || Sbjct 110 GTGGATTAATTCGATGCAACGCGAAGAACCTTACCTGGGTTTGACATCTACCGGACCGCT 169 Query 120 CTAGAGATAGAGGTTTCCC 138 | |||||| | || ||||| Sbjct 170 CCAGAGAT-GGGGCTTCCC 187 >seq288409 Length=185 Score = 141 bits (156), Expect = 3e-31 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||||| | ||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct 148 GACTGCCGGGGTCAACTCGGAGGAAGGTGGGGATGACGTCAAGTCATCATGCCCCTTATG 89 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| ||||| ||||||||||| |||| ||||| |||| |||| ||||| | Sbjct 88 TCCAGGGCTTCACACATGCTACAATGGCTGGTACAGAGGGCTGCGATACCGTGAGGTGGA 29 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTC 414 || |||||| ||||| ||||||||| Sbjct 28 GCGAATCCCTTAAAGCCAGTCTCAGTTC 1 >seq112294 Length=240 Score = 98.7 bits (108), Expect = 3e-18 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 425 CTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTG 484 ||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1 CTGCAACTCGACTGCGTGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTG 60 Query 485 AATACGTTCCCG 496 |||||||||||| Sbjct 61 AATACGTTCCCG 72 >seq143115 Length=81 Score = 84.2 bits (92), Expect = 7e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 291 AGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAA 350 ||||||||| |||||||| || ||||| ||||||||| | ||||||||| ||||||||| Sbjct 1 AGGTGGGGATGACGTCAAGTCCTCATGGCCCTTATGAGCTTGGCTACACATGTGCTACAA 60 Query 351 TGGACAATACAAAGGG 366 ||| | |||||||| Sbjct 61 TGGTAATGACAAAGGG 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1499307775680