Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq7220 161 2e-37 seq164400 116 6e-24 seq5355 116 6e-24 seq1604 102 1e-19 seq4440 87.8 3e-15 seq147506 82.4 1e-13 >seq7220 Length=93 Score = 161 bits (178), Expect = 2e-37 Identities = 91/92 (99%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2 ATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 61 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 |||||||||||||||||||||||||||||||| Sbjct 62 CCACAAGCCAGTTATCCCTGTGGTAACTTTTC 93 >seq164400 Length=81 Score = 116 bits (128), Expect = 6e-24 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 94 GTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153 |||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| Sbjct 3 GTGGGTGAACAATCCAACACTTGGCGAATTCTGCTTCGAAATGATAGGAAGAGCCGACAT 62 Query 154 CGAAGGATCAAAAAGCAAC 172 ||||| ||||||||||||| Sbjct 63 CGAAGAATCAAAAAGCAAC 81 >seq5355 Length=81 Score = 116 bits (128), Expect = 6e-24 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 94 GTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153 |||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| Sbjct 3 GTGGGTGAACAATCCAACACTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACAT 62 Query 154 CGAAGGATCAAAAAGCAAC 172 ||||| ||||||||||||| Sbjct 63 CGAAGAATCAAAAAGCAAC 81 >seq1604 Length=88 Score = 102 bits (112), Expect = 1e-19 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 59 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 1 >seq4440 Length=332 Score = 87.8 bits (96), Expect = 3e-15 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 222 TTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281 |||||| |||||||||| | ||||| | |||||||||||||||||||||| |||||| Sbjct 332 TTTCTGACACCTCTAGCTTAAAATTCTAAAAGACTAAAGGATCGATAGGCCACGCTTTCA 273 Query 282 TGGTTTGTATTCA 294 |||||||||||| Sbjct 272 CGGTTTGTATTCA 260 >seq147506 Length=422 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 ||||||| |||||||| |||||||||| | ||| | | ||||| ||||||||||||| Sbjct 422 TGTGGTAGCTTTTCTGACACCTCTAGCTTTAAACTATAAAAGACTAGAGGATCGATAGGC 363 Query 272 CACACTTTCATGGTTTGTATTCA 294 ||| | |||| ||||||||| || Sbjct 362 CACGCGTTCAAGGTTTGTATCCA 340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 851734417248