Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq190176 324 3e-86 seq298176 138 3e-30 seq298175 104 5e-20 >seq190176 Length=609 Score = 324 bits (358), Expect = 3e-86 Identities = 332/442 (75%), Gaps = 44/442 (10%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| |||||||||||| |||| || | | || || Sbjct 57 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTCACCCTGGGCGGATTAGCCTGGCC 116 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | ||||||||||| | |||||| | | ||| ||| | | ||||||||||||||| Sbjct 117 CAGGAACCCTTGGTCATCCGGCGGCAGAGTTTCTCACTCTGCTTTCGCTACTCATGCCTG 176 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGA--CACG 178 ||||||||||| || ||||||||| |||| | | ||||| ||| || || | Sbjct 177 CATTCTCACTCCCACACCCTCCACCACTAGATCACTCTGTGGCTTC--CACGGATGCAGG 234 Query 179 ACGCTCCCCTACCCAACCACACAGGTTGCC-------------------ACA-------- 211 ||||||||||||||| ||||||| | ||| ||| Sbjct 235 ACGCTCCCCTACCCACCCACACACCTGGCCGGCCCTCCGTAGAGAACCGACAAGCTAACG 294 Query 212 -------------GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCA 258 |||||||||| |||| |||||||||||||| ||||||| | | || Sbjct 295 TGTGAGTGCCGCGGCTTCGGCGGTGTACTTGAGCCCCGCTACATTGTCGGCGCAGGACCA 354 Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 355 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAAGCCAACCTCCTG 414 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 ||||||| ||| || ||||||||||| ||||| ||| | ||||||||||||||| | Sbjct 415 GTTGTCTTCGCGACCCCACATCCTTTTCCACTTAGTACACGCTTAGGGGCCTTAGCCGGC 474 Query 379 GATCTGGGCTGTTTCCCTCTCG 400 |||||||| ||||||||||||| Sbjct 475 GATCTGGGTTGTTTCCCTCTCG 496 >seq298176 Length=132 Score = 138 bits (152), Expect = 3e-30 Identities = 102/118 (86%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 || ||||||||| | ||| || ||||||| |||||| ||||||| || ||||| ||||| Sbjct 15 CCGCAGCTTCGGTG-ATACGTTTAGCCCCGGTACATTTTCGGCGCAGAGTCACTCGACCA 73 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 ||||||||||||||||||||| || | |||||||||| |||||||| ||||||||||| Sbjct 74 GTGAGCTATTACGCACTCTTTAAATGGTGGCTGCTTCTAAGCCAACATCCTGGTTGTC 131 >seq298175 Length=227 Score = 104 bits (114), Expect = 5e-20 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || |||||||| ||||||||| |||||| ||||||| |||| | || ||| | | | | Sbjct 76 CGCCTACGCCTTTCGGCCTCGGCTTAGGTCCCGACTAACCCTGAGCGGACGAGCCTTCCT 135 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | |||| |||| | | |||| ||| ||||||| ||||| || |||||||||| || | Sbjct 136 CAGGAAACCTTAGGCATTCGGTGGAGGGGATTCTCACCCCTCTTTCGCTACTCATACCGG 195 Query 121 CATTCTCACT 130 |||||||||| Sbjct 196 CATTCTCACT 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173926088192