Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq303162 174 2e-41 seq1042 129 9e-28 seq1043 73.4 6e-11 >seq303162 Length=170 Score = 174 bits (192), Expect = 2e-41 Identities = 140/169 (83%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 18 TTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGT 77 |||||||| |||||| ||||||||||| ||| ||||| ||||| ||| | |||| | Sbjct 1 TTAGATGCTTTCAGCGGTTATCCCTTCCGAACGTAGCTAACCAGCGGTGCCCCTGGCGGG 60 Query 78 ACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCT 137 |||||||| ||||||||||| |||| ||||||||||||||||||| |||||| | || Sbjct 61 ACAACTGGCACACCAGAGGTTCGTCCGTCCCGGTCCTCTCGTACTAGGGACAGGTTTCCT 120 Query 138 CAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGT 186 ||| |||| ||||| | || ||||||| |||||||||||||| |||||| Sbjct 121 CAAGTTTCTTACGCGCGCGGCGGATAGAGACCGAACTGTCTCACGACGT 169 >seq1042 Length=133 Score = 129 bits (142), Expect = 9e-28 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 ||||| |||| ||||||||| ||||||||| |||||| ||| ||| || |||| || ||| Sbjct 119 GATAGAGACCAAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGC 60 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||| ||||||||| |||| |||||| |||||||| || ||| |||||||| Sbjct 59 GAACAGCCGAACCCTTGGAACCTTTTTCAGCTCCAGGATGTGATGAGTCGACATCG 4 >seq1043 Length=107 Score = 73.4 bits (80), Expect = 6e-11 Identities = 75/98 (77%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 88 CACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT 147 ||||||||||| || ||||||||||||||||||| || || | || |||| |||| Sbjct 98 CACCAGAGGTTAACCCTTCCCGGTCCTCTCGTACTAGGGTTAGATTCTTTCAATTTTCTG 39 Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACG 185 ||| || ||||| |||| ||||||||| ||||| Sbjct 38 CTGCCTACAGTAGATAGAGACCAAACTGTCTCACGACG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 778440160588