Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq233047 235 1e-59 seq233048 104 6e-20 seq143074 96.9 8e-18 seq57078 87.8 4e-15 >seq233047 Length=482 Score = 235 bits (260), Expect = 1e-59 Identities = 166/190 (87%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||| || || |||||||| | ||||||||||||||||||||||| Sbjct 108 TTTACAACCCGAAGGCCGTCATCCCTCACGCGGCGTCGCTGCATCAGGCTTGCGCCCATT 167 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 168 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 227 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| | ||| |||||||| | |||| ||||||||| ||| |||||||||||| ||| Sbjct 228 GGCCGATCACCCTCTCAGGTCGGCTACCCGTCGTCGCCTTGGTAGGCCATTACCCCACCA 287 Query 185 ACTAGCTAAT 194 || |||| || Sbjct 288 ACAAGCTGAT 297 >seq233048 Length=347 Score = 104 bits (114), Expect = 6e-20 Identities = 192/277 (69%), Gaps = 25/277 (9%) Strand=Plus/Plus Query 154 ATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGA 213 |||||||||| |||| ||| ||||| | ||||||||||||| | |||| |||| | Sbjct 3 ATCGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATGCGCCGCGGGTCCATCTGT 62 Query 214 TAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGT-----CTTGCGACGTT---------ATG 259 |||| || | || | | || | | || | | |||| ||| || Sbjct 63 AAGTGGTAG--CTAAAAGCCACCTTTTATGATTGAACCATGCG--GTTCAATCAAGCATC 118 Query 260 CGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTT-CCCAGACATT 318 ||||||||||| | |||||| | |||||||| || ||||||| || |||| || Sbjct 119 CGGTATTAGCCCCGGTTTCCCGGAGTTATCCCAGTCTTACAGGCAGGTTACCCACGTGTT 178 Query 319 ACTCACCCGTCCGCCACTCGTCAGCGAAGC-AGCAAGCTGCTTCCTGTTACCGTTCGACT 377 ||||||||||||||| || | | ||| |||||||| | | || ||| |||||| Sbjct 179 ACTCACCCGTCCGCCGCTG---ACCTAAGGGAGCAAGCTCCCGTCGGT--CCGCTCGACT 233 Query 378 TGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||| |||||| ||||||||||||| ||||| Sbjct 234 TGCATGTATTAGGCACGCCGCCAGCGTTCGTCCTGAG 270 >seq143074 Length=81 Score = 96.9 bits (106), Expect = 8e-18 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 52 GCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTC 111 ||||||||||||||| ||| ||||||||||||||||| | | ||||||| ||||||| Sbjct 80 GCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCTTCGAACGAAGTCTGGGCCGTGTC 21 Query 112 TCAGTTCCAGTGTGGCTG 129 ||||| |||||||||||| Sbjct 20 TCAGTCCCAGTGTGGCTG 3 >seq57078 Length=81 Score = 87.8 bits (96), Expect = 4e-15 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||| | ||| |||| |||| ||||||||||||||| ||||||||||||||||||||| | Sbjct 81 CACGTGACATTGCTGGATCAAGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTTC 22 Query 91 CGTAGGAGTCTGGACCGTGTC 111 | ||||||| ||||||| Sbjct 21 AAACGAAGTCTGGGCCGTGTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1218586319808