Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq233047 408 1e-111 seq143330 143 8e-32 seq233048 102 2e-19 seq212 80.6 8e-13 seq143074 75.2 3e-11 seq57078 75.2 3e-11 >seq233047 Length=482 Score = 408 bits (452), Expect = 1e-111 Identities = 361/447 (81%), Gaps = 13/447 (3%) Strand=Plus/Minus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACC 81 ||| |||| ||||||||||||| ||||||| | |||||||| || | |||||| Sbjct 443 GAGTGGCGAACGGGTGAGTAACACGTGGGTGATCTGCCCTGGACTCTGGGATAAGCCTGG 384 Query 82 GAAA---GGTATGCTAATACGAGATAATATACTTT-TATCGCATGGTAGAAGTATCAAAG 137 |||| ||| ||||||| |||| | ||||| | |||||||| | | |||| Sbjct 383 GAAACTGGGT---CTAATACCGGATATTC-ACTTTCTCTCGCATGGGGGTTGGTGGAAAG 328 Query 138 CTCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACC 197 || ||||| |||||| | |||||| | || |||| |||||| ||||| ||| |||| Sbjct 327 CTTTTGCGGTTCAGGATGGGCCCGCGGCCTATCAGCTTGTTGGTGGGGTAATGGCCTACC 268 Query 198 AAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGG 257 |||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 267 AAGGCGACGACGGGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGG 208 Query 258 TCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGC 317 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 207 CCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGC 148 Query 318 AGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA- 376 ||| |||||||||||| ||||| ||||||||||| ||||| |||| || || ||| || Sbjct 147 AGCGACGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCACCAGGGACGAA 88 Query 377 ----TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA 432 | ||||||||| || || ||||| ||||| |||||||||||||||||||||||| Sbjct 87 GCGTGAGTGACGGTACCTGGAGAAGAAGCACCGGCCAACTACGTGCCAGCAGCCGCGGTA 28 Query 433 ATACGTAGGGGGCTAGCGTTATCCGGA 459 |||||||||| || |||||| |||||| Sbjct 27 ATACGTAGGGTGCGAGCGTTGTCCGGA 1 >seq143330 Length=138 Score = 143 bits (158), Expect = 8e-32 Identities = 104/119 (87%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 ||||||| | | || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 ACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 60 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| |||||| |||||||||| | |||||||||| | ||| ||| ||||||||||||| Sbjct 61 TGGCAAGCGTTGTCCGGAATTA-TTGGGCGTAAAGCGCGCGCAGGCGGTTTCTTAAGTC 118 >seq233048 Length=347 Score = 102 bits (112), Expect = 2e-19 Identities = 144/198 (73%), Gaps = 16/198 (8%) Strand=Plus/Minus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTAC-ACACGGATAACATACC 81 ||||||||||||||||||||| ||||||||||||||| |||| || ||||||| Sbjct 196 AGCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCC-TGTAAGACTGGGATAACTCCGG 138 Query 82 GAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCC 141 |||| |||||||| ||| | | || | |||||||| || || |||| | Sbjct 137 GAAACCGGGGCTAATACCGGATGCTTGA-TTGAACCGCATGGTTCAATCATAAAAGGT-- 81 Query 142 GGC-----GGTACAG------GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACG 190 ||| | ||| ||| |||||||| | |||||||||||||| |||||||| Sbjct 80 GGCTTTTAGCTACCACTTACAGATGGACCCGCGGCGCATTAGCTAGTTGGTGAGGTAACG 21 Query 191 GCTTACCAAGGCGACGAT 208 ||| |||||||||||||| Sbjct 20 GCTCACCAAGGCGACGAT 3 >seq212 Length=127 Score = 80.6 bits (88), Expect = 8e-13 Identities = 75/94 (80%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 350 GTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTA 409 |||||||| || || ||||||| || ||||| |||||| || | ||| |||||| | Sbjct 35 GTCGTAAACTTCGATCATCAAGGAGGAACATGACAGTACTT-AGATGAAAGTCCCGGCAA 93 Query 410 ACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG 443 || |||||||||||||||||||||||| |||| Sbjct 94 ACCTCGTGCCAGCAGCCGCGGTAATACGGGGGGG 127 >seq143074 Length=81 Score = 75.2 bits (82), Expect = 3e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 235 GCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTG 294 |||||| ||| |||||||||||| ||| ||| | | ||||||||||||||||| ||| Sbjct 5 GCCACACTGGGACTGAGACACGGCCCAGACTTCGTTCGAAGGCAGCAGTGGGGAATCTTG 64 Query 295 CACAATGGGCAAAAGC 310 ||||||||| |||| Sbjct 65 GACAATGGGCGCAAGC 80 >seq57078 Length=81 Score = 75.2 bits (82), Expect = 3e-11 Identities = 65/81 (80%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 251 GACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGC 310 ||||||| ||| ||| | | ||||||||||||||||||||| ||||||||| |||| Sbjct 1 GACACGGCCCAGACTTCGTTTGAAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGC 60 Query 311 CTGATGCAGCAACGCCGCGTG 331 |||| |||||| | | |||| Sbjct 61 TTGATCCAGCAATGTCACGTG 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1492927742592