Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq102257 260 3e-67 seq143330 150 4e-34 seq143329 116 9e-24 seq233047 93.3 1e-16 >seq102257 Length=583 Score = 260 bits (288), Expect = 3e-67 Identities = 261/339 (77%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTA 129 ||||||||||||||||||||| | |||||| ||||| | ||| |||||| || Sbjct 583 CCGGAATTACTGGGCGTAAAGAGCTCGTAGGCGGTTTGTCGCGTCGTCTGTGAAATTCTG 524 Query 130 TGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189 ||||| || ||| || || | | || |||| | ||||| | ||| Sbjct 523 CAACTCAATTGTAGGCGTGCAGGCGATACGGGCAGACTTGAGTACTACAGGGGAGACTGG 464 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 ||||||| |||||||||||||||||| |||||| |||||||||||| ||||||||||||| Sbjct 463 AATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGGTGGCGAAGGCGG 404 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 | |||| ||||||||| |||||| |||||||||||||||| |||||||||||||| Sbjct 403 GTCTCTGGGTAGTAACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAGGATTAGATA 344 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGG 369 |||||||||||||||||||||||||||| | ||| |||| | | | | | || | Sbjct 343 CCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGGGTTTCCGCCCTTTAG 284 Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| |||||||||||| |||| | ||| ||||||||||| Sbjct 283 TGCTGCAGCAAACGCATTAAGCACTCCGCCTGGGGAGTA 245 >seq143330 Length=138 Score = 150 bits (166), Expect = 4e-34 Identities = 103/116 (89%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 10 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 69 || ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| | Sbjct 14 AGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGT 73 Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAG 125 ||||||||| ||||||||||| | ||| ||| ||||||||||||| || ||| ||| Sbjct 74 CCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGTTTCTTAAGTCTGATGTGGAAG 129 >seq143329 Length=135 Score = 116 bits (128), Expect = 9e-24 Identities = 109/136 (80%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 110 AAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTG-CTTTTGAAACTGCAGGGCTA 168 ||||| || ||||||| | ||||||||| |||| | | || ||||||| | || Sbjct 135 AAGTCTGATGTGAAAGCCCCCGGCTCAACCG-GGGAGGGTCATTGGAAACTGGGGAACTT 77 Query 169 GAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAG 228 |||||||| || || ||||||||||| |||||||||||||||||||||| || |||| Sbjct 76 GAGTGCAGAAGAGGAGAGTGGAATTCCACGTGTAGCGGTGAAATGCGTAGAGATGTGGAG 17 Query 229 GAACACCAGTGGCGAA 244 |||||||||||||||| Sbjct 16 GAACACCAGTGGCGAA 1 >seq233047 Length=482 Score = 93.3 bits (102), Expect = 1e-16 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| || || ||||| ||||| |||||||||||||||||||||||||||||||||| || Sbjct 74 TACCTGGAGAAGAAGCACCGGCCAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 15 Query 61 TAGCGTTATCCGGA 74 |||||| |||||| Sbjct 14 GAGCGTTGTCCGGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199446220544