Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq900 342 2e-91 seq2542 206 8e-51 seq262324 109 2e-21 seq306082 95.1 4e-17 >seq900 Length=384 Score = 342 bits (378), Expect = 2e-91 Identities = 273/323 (85%), Gaps = 17/323 (5%) Strand=Plus/Plus Query 194 CCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGA 253 ||||| |||| |||||||||||||| |||||||| | |||||||| ||||||||||||| Sbjct 1 CCATCCAAAGCTGATAGGGCAGAAACTTGAATGATCTGTCGCCGGCGCAAGGCCATGCGA 60 Query 254 TTCGTTAAGTTATTATGAATCACCA-------AGGA--GCCCCGAAGGGCGTTGGTTTTT 304 | || ||||||||||| |||||| ||| ||||| || ||||||| Sbjct 61 TCCGCACAGTTATTATGACTCACCACAATACCAGGGTTGCCCCT----GCATTGGTTTCA 116 Query 305 TATCTAATAAATACACCCCTTCCGAA-GTCGGGGTTTTTAGCATGTATTAGCTCTAGAAT 363 |||||||||||||| ||||||| || |||||| ||| |||||||||||||||||||| Sbjct 117 -ATCTAATAAATACATCCCTTCCAAAAGTCGGGATTTCATGCATGTATTAGCTCTAGAAT 175 Query 364 TACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCC 423 ||| ||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||| Sbjct 176 TACTACGGTTATCCAAGTAGTAAGATACTATCAAATAAACTATAACTGATATAATGAGCC 235 Query 424 ATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCA-TGGCTTAATCTTTGA 481 |||||||||||||| ||||||| ||| ||||||||||||||||| || |||||||||||| Sbjct 236 ATTCGCAGTTTCACAGTATAGAGTTGTTTATACTTAGACATGCATTGCCTTAATCTTTGA 295 Query 482 GACAAGCATATGACTACTGGCAG 504 ||| ||| ||||||||||||||| Sbjct 296 GACGAGCGTATGACTACTGGCAG 318 >seq2542 Length=529 Score = 206 bits (228), Expect = 8e-51 Identities = 141/159 (89%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||| | |||| || ||||| | || |||||||||||||||||| Sbjct 159 GTACTCATTCCAATTGCCAGACTTGTAAAAGCCCGGCATTGTTATTTATTGTCACTACCT 100 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 99 CCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTC 40 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCG 159 ||||||||||||||||||||||||||||| ||||| ||| Sbjct 39 TCTCAGGCTCCCTCTCCGGAATCGAACCCCAATTCTCCG 1 >seq262324 Length=81 Score = 109 bits (120), Expect = 2e-21 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||| ||||| ||| |||||||| || |||||||| Sbjct 2 TCTCAGGCTCCCTCTCCGGAATCGAACCCCAATTCTCCGCTACCCGTTAATGCCATGGTA 61 Query 181 GGCCACTATCCTACCATC 198 ||||| || ||||||||| Sbjct 62 GGCCAATACCCTACCATC 79 >seq306082 Length=81 Score = 95.1 bits (104), Expect = 4e-17 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 153 TTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGG 212 ||| |||||||||||| || ||||||||||||| || ||| ||||| |||| |||||||| Sbjct 81 TTCTCCGTTACCCGTTAATGCCATGGTAGGCCAATACCCTGCCATCCAAAGCTGATAGGG 22 Query 213 CAGAAATTTGAATGA 227 |||||| |||||||| Sbjct 21 CAGAAACTTGAATGA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1505687808768