Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq684 250 6e-64 seq683 165 2e-38 >seq684 Length=114989 Score = 250 bits (276), Expect = 6e-64 Identities = 294/397 (74%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 ||||| ||||||||| |||||||||||||||||||| ||| || |||||| |||| || Sbjct 48459 AAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATGCAAGTGTTATCCG 48518 Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGG 134 || |||||||||||||||||| ||||| |||| |||| | ||| ||||| || Sbjct 48519 GATTTACTGGGCGTAAAGCGTCTGCAGGTGGTTTCTTAAGTCTACTGTTAAATCTTGAGG 48578 Query 135 CTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAAT 194 || ||||| | |||| | | ||| |||| |||| | || || | ||||| Sbjct 48579 CTCAACCTCAAATCTGCAGTAGAAACTAGGAGACTTGAGTATAGTAGGGGTAGAGGGAAT 48638 Query 195 TCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCC 254 | | ||| ||| ||||||||||||||||| | | ||||||| |||||||||||| | Sbjct 48639 TTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATGGCGAAGGCACTCT 48698 Query 255 CCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 314 ||||| || |||||| |||| |||||||| |||||||||| ||||||||||||| Sbjct 48699 ACTGGGCTATTACTGACACTCAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATACCC 48758 Query 315 TGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG--GGATTTACTTCCTTGGTAA 372 ||||||| ||| |||||||| ||| | |||||| | || || | ||| Sbjct 48759 CAGTAGTCCTAGCCGTAAACGATGGATACTCGATGTTGGACGTATCGACCCGTTCAGTAT 48818 Query 373 CGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | |||||||||||| |||| ||||||||||| ||| Sbjct 48819 CTTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 48855 Score = 250 bits (276), Expect = 6e-64 Identities = 294/397 (74%), Gaps = 2/397 (1%) Strand=Plus/Minus Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 ||||| ||||||||| |||||||||||||||||||| ||| || |||||| |||| || Sbjct 114351 AAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATGCAAGTGTTATCCG 114292 Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGG 134 || |||||||||||||||||| ||||| |||| |||| | ||| ||||| || Sbjct 114291 GATTTACTGGGCGTAAAGCGTCTGCAGGTGGTTTCTTAAGTCTACTGTTAAATCTTGAGG 114232 Query 135 CTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAAT 194 || ||||| | |||| | | ||| |||| |||| | || || | ||||| Sbjct 114231 CTCAACCTCAAATCTGCAGTAGAAACTAGGAGACTTGAGTATAGTAGGGGTAGAGGGAAT 114172 Query 195 TCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCC 254 | | ||| ||| ||||||||||||||||| | | ||||||| |||||||||||| | Sbjct 114171 TTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATGGCGAAGGCACTCT 114112 Query 255 CCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 314 ||||| || |||||| |||| |||||||| |||||||||| ||||||||||||| Sbjct 114111 ACTGGGCTATTACTGACACTCAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATACCC 114052 Query 315 TGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG--GGATTTACTTCCTTGGTAA 372 ||||||| ||| |||||||| ||| | |||||| | || || | ||| Sbjct 114051 CAGTAGTCCTAGCCGTAAACGATGGATACTCGATGTTGGACGTATCGACCCGTTCAGTAT 113992 Query 373 CGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | |||||||||||| |||| ||||||||||| ||| Sbjct 113991 CTTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 113955 >seq683 Length=42213 Score = 165 bits (182), Expect = 2e-38 Identities = 235/329 (71%), Gaps = 14/329 (4%) Strand=Plus/Plus Query 16 AGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGG 75 ||| |||||||||| |||||||||||||||||||| ||| |||| || ||||||| ||| Sbjct 41682 AGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAAGACGAAGGGGGCGAGCGTTATCCGG 41741 Query 76 AATTACTGGGCGTAAAGCGTGCGCAGGCGG----TTGTGTAAGACAGGTGTGAAATCCCC 131 ||| ||||||||||||| || || |||| | || ||| || || |||| Sbjct 41742 AATGACTGGGCGTAAAGGGTCCGTAGGCAGCATTTTTTGTTGGAA----GTTAAATAAAA 41797 Query 132 GGGCTTAACCTGGGAATTGCATTTGTGAC---TGCACGACTAGAGTGTGTCAGAGGGGGG 188 ||||||| | || | || | | | | | | |||| || ||| | | Sbjct 41798 AAGCTTAACTTTT---TTCCGCTTCTAAAACGTAAATGCTTTGAGTTTGATAGAAGATAG 41854 Query 189 TGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248 ||||| ||| | || |||| || | |||| |||| ||||| | || ||||||| Sbjct 41855 CAGAATTTCACAAGGAGGGGTGATATCCAGAGATCTGTGAAGGAATATCAGATGCGAAGG 41914 Query 249 CAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAG 308 | || || | |||||||||| | | | |||||||| |||||||||||||||||||| Sbjct 41915 CGGCTATCTAGATCAACACTGACGTTGAGGGACGAAAGCATGGGGAGCAAACAGGATTAG 41974 Query 309 ATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||| |||||||| ||| Sbjct 41975 ATACCCTGGTAGTCCATGCCCTAAAAGAT 42003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289591179136