Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq683 154 2e-35 seq684 136 5e-30 >seq683 Length=42213 Score = 154 bits (170), Expect = 2e-35 Identities = 182/242 (75%), Gaps = 11/242 (5%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| |||||||| |||||||| ||||| | || ||| ||||| Sbjct 31298 CTTACAGCACCGGGCAGGTGTCAGTCCCTATACATCTTCTTAC-GAATTAGCAGAGACCT 31240 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| |||||||||||| ||| | ||||| ||| | | || | || | | Sbjct 31239 GTGTTTTTACTAAACAGTCGCTACCCCCAATTCTGTGCCA--ATCAAAA----AAAATTT 31186 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 | || | | ||| ||||||||||||||||| | | ||||||||||| |||||| Sbjct 31185 CTTTTTTTT--AAT--CACTCCTTCTCCCGAAGTTACAGAGTCATTTTGCCGAGTTCCTT 31130 Query 187 AACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246 |||| | || | ||||||||||||| |||||| | |||||||||||||||| | | Sbjct 31129 TACCATAATTATTTCAAACGCCTTAGTATACTCTACTCGTCCACCTGTGTCGGTTTTCAG 31070 Query 247 TA 248 || Sbjct 31069 TA 31068 >seq684 Length=114989 Score = 136 bits (150), Expect = 5e-30 Identities = 176/247 (71%), Gaps = 26/247 (11%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || |||||||| ||||| | ||| || Sbjct 51644 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTAC-GACTTAGCGGA 51586 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||||||||||| |||||||||||||| || | ||| ||| | || Sbjct 51585 GACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTGGTTATTGCAACCTTT------TAAA 51532 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 |||||||||||||||||||||||||||| |||||||||| | Sbjct 51531 -------------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGT 51491 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | ||||| | || | ||||||||| ||||||| | ||||||||||||| Sbjct 51490 TCCTTAGAGAGAGTTCTCTCGCGCCCCTTAGTATACTCTACCCACCTACCTGTGTCGGTT 51431 Query 242 TACGGTA 248 || |||| Sbjct 51430 TATGGTA 51424 Score = 136 bits (150), Expect = 5e-30 Identities = 176/247 (71%), Gaps = 26/247 (11%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || |||||||| ||||| | ||| || Sbjct 111166 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTAC-GACTTAGCGGA 111224 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||||||||||| |||||||||||||| || | ||| ||| | || Sbjct 111225 GACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTGGTTATTGCAACCTTT------TAAA 111278 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 |||||||||||||||||||||||||||| |||||||||| | Sbjct 111279 -------------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGT 111319 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | ||||| | || | ||||||||| ||||||| | ||||||||||||| Sbjct 111320 TCCTTAGAGAGAGTTCTCTCGCGCCCCTTAGTATACTCTACCCACCTACCTGTGTCGGTT 111379 Query 242 TACGGTA 248 || |||| Sbjct 111380 TATGGTA 111386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694395398732