Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq684 93.3 4e-17 seq683 89.7 5e-16 >seq684 Length=114989 Score = 93.3 bits (102), Expect = 4e-17 Identities = 122/166 (73%), Gaps = 10/166 (6%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| |||| || |||||||||| || ||| ||| | | | |||| Sbjct 51430 AAACCGACACAGGTAGGTGGGTAGAGTATACTAAGGGGCGCGAGAGAA-CTCTCTCTAAG 51488 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| ||| ||| Sbjct 51489 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCT----TTAAA----AGG 51540 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||| | ||||||| || |||||||| |||||||||||| || Sbjct 51541 TTGCAATAACCAGGTCCAAGCGACTGTTTACCAAAAACACAGGTCT 51586 Score = 93.3 bits (102), Expect = 4e-17 Identities = 122/166 (73%), Gaps = 10/166 (6%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| |||| || |||||||||| || ||| ||| | | | |||| Sbjct 111380 AAACCGACACAGGTAGGTGGGTAGAGTATACTAAGGGGCGCGAGAGAA-CTCTCTCTAAG 111322 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| ||| ||| Sbjct 111321 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCT----TTAAA----AGG 111270 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||| | ||||||| || |||||||| |||||||||||| || Sbjct 111269 TTGCAATAACCAGGTCCAAGCGACTGTTTACCAAAAACACAGGTCT 111224 >seq683 Length=42213 Score = 89.7 bits (98), Expect = 5e-16 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | || || || |||||||||||| |||| ||| | ||| |||| Sbjct 31074 AAACCGACACAGGTGGACGAGTAGAGTATACTAAGGCGTTTGAAATAATTATGGTAAAGG 31133 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||| |||||| |||| |||||||||||||| || Sbjct 31134 AACTCGGCAAAATGACTCTGTAACTTCGGGAGAA 31167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531196480136