Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq684 84.2 2e-14 seq683 82.4 7e-14 >seq684 Length=114989 Score = 84.2 bits (92), Expect = 2e-14 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||| |||||||||| ||| || || || ||| || || Sbjct 51549 ACCAGGTCCAAGCGACTGTTTACCAAAAACACAGGTCTCCGCTAAGTCGTAAGACGATGT 51608 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || ||| |||||||||||| ||||||||||||||| Sbjct 51609 ATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 51644 Score = 84.2 bits (92), Expect = 2e-14 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||| |||||||||| ||| || || || ||| || || Sbjct 111261 ACCAGGTCCAAGCGACTGTTTACCAAAAACACAGGTCTCCGCTAAGTCGTAAGACGATGT 111202 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || ||| |||||||||||| ||||||||||||||| Sbjct 111201 ATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 111166 >seq683 Length=42213 Score = 82.4 bits (90), Expect = 7e-14 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| |||||| || || ||| || |||||||| ||| Sbjct 31219 GCGACTGTTTAGTAAAAACACAGGTCTCTGCTAATTCGTAAGAAGATGTATAGGGACTGA 31278 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 | |||||||||||| | ||| |||| Sbjct 31279 CACCTGCCCGGTGCTGTAAGATTAA 31303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476796840604