Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq684 271 2e-70 seq683 214 5e-53 >seq684 Length=114989 Score = 271 bits (300), Expect = 2e-70 Identities = 306/410 (75%), Gaps = 31/410 (8%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | || ||||||| ||| ||| ||||||||| | |||||| Sbjct 51826 GCATCTTCACAGACAGGTCTATTTCACCGAGCCTCTCTCCGAGACAGCGTCCAAATCGTT 51767 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51766 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 51707 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCC-CAT 191 | ||||||||||||||| ||||||||||| | | ||||| || | || |||| | | Sbjct 51706 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTAATTAGCTTTGCTTACGCGAACCAACGT 51647 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 | ||||||||||||||| |||||||||||| ||| |||| || ||| || || || Sbjct 51646 CT-TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTACGACTTAGCG 51588 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTT 311 ||| |||||||||| ||||||||||| | |||||| | || Sbjct 51587 GAGACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTGGT-TATT---------------- 51545 Query 312 ACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTG 371 |||| |||| | | ||| | ||||||||||||||||||| || ||||| Sbjct 51544 -----GCAA--CCTT-----TTAAAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTG 51497 Query 372 CCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCA 421 || |||||||| |||||||||| || |||| |||| ||||||||| Sbjct 51496 CCGAGTTCCTTAGAGAGAGTTCTCTCGCGCCCCTTAGTATACTCTACCCA 51447 Score = 271 bits (300), Expect = 2e-70 Identities = 306/410 (75%), Gaps = 31/410 (8%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | || ||||||| ||| ||| ||||||||| | |||||| Sbjct 110984 GCATCTTCACAGACAGGTCTATTTCACCGAGCCTCTCTCCGAGACAGCGTCCAAATCGTT 111043 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 111044 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 111103 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACC-CCAT 191 | ||||||||||||||| ||||||||||| | | ||||| || | || |||| | | Sbjct 111104 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTAATTAGCTTTGCTTACGCGAACCAACGT 111163 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 | ||||||||||||||| |||||||||||| ||| |||| || ||| || || || Sbjct 111164 C-TTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTACGACTTAGCG 111222 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTT 311 ||| |||||||||| ||||||||||| | |||||| | || Sbjct 111223 GAGACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTGGT-TATT---------------- 111265 Query 312 ACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTG 371 |||| |||| | | ||| | ||||||||||||||||||| || ||||| Sbjct 111266 -----GCAA--CCTT-----TTAAAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTG 111313 Query 372 CCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCA 421 || |||||||| |||||||||| || |||| |||| ||||||||| Sbjct 111314 CCGAGTTCCTTAGAGAGAGTTCTCTCGCGCCCCTTAGTATACTCTACCCA 111363 >seq683 Length=42213 Score = 214 bits (236), Expect = 5e-53 Identities = 208/269 (77%), Gaps = 9/269 (3%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||||| ||||| |||||||||||||||| | | ||| ||||||||| | ||| Sbjct 31478 CTGCATCTGCACAGATATTTCAATTTCACTGAATTTATGGTAGAGACAGCGGGGAAGTCG 31419 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 31418 TTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGT 31359 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCA 190 | ||||| |||||||||||| ||| ||| | || || |||| | Sbjct 31358 CAGAGTTACAGCCGCCGTTTACTGGGACTTAAGTTAAAGGC---------CAAAACCTCT 31308 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 | |||| ||| | |||||||||||| |||| |||||||| || ||| || || || Sbjct 31307 CCCTTTAATCTTACAGCACCGGGCAGGTGTCAGTCCCTATACATCTTCTTACGAATTAGC 31248 Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGC 279 |||| ||||||||||| ||||||||||| Sbjct 31247 AGAGACCTGTGTTTTTACTAAACAGTCGC 31219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260791376128