Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq684 361 1e-97 seq683 269 6e-70 >seq684 Length=114989 Score = 361 bits (400), Expect = 1e-97 Identities = 295/358 (82%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||||||||||| || | ||||||| | |||||||||| Sbjct 51826 GCATCTTCACAGACAGGTCTATTTCACCGAGCCTCTCTCCGAGACAGCGTCCAAATCGTT 51767 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51766 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 51707 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||| || ||||||| ||| |||| | || | | ||| | Sbjct 51706 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTAATTAGCTTTGCTTACGCGAACCAACGT 51647 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 | |||||||||| |||| |||||||||||||| || |||||||||||| ||||||||| | Sbjct 51646 CTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTACGACTTAGCGG 51587 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAG 306 | ||||||||||||||||||||||||||||| ||| | ||| ||| | | || Sbjct 51586 AGACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTGGTTATTGCAACCT----TTTAAAG 51531 Query 307 GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||||| ||||||||||| |||||||||||||||||| | ||||||| Sbjct 51530 GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTCTC 51473 Score = 361 bits (400), Expect = 1e-97 Identities = 295/358 (82%), Gaps = 4/358 (1%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||||||||||| || | ||||||| | |||||||||| Sbjct 110984 GCATCTTCACAGACAGGTCTATTTCACCGAGCCTCTCTCCGAGACAGCGTCCAAATCGTT 111043 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 111044 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 111103 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||| || ||||||| ||| |||| | || | | ||| | Sbjct 111104 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTAATTAGCTTTGCTTACGCGAACCAACGT 111163 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 | |||||||||| |||| |||||||||||||| || |||||||||||| ||||||||| | Sbjct 111164 CTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTACGACTTAGCGG 111223 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAG 306 | ||||||||||||||||||||||||||||| ||| | ||| ||| | | || Sbjct 111224 AGACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTGGTTATTGCAACCT----TTTAAAG 111279 Query 307 GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||||| ||||||||||| |||||||||||||||||| | ||||||| Sbjct 111280 GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTCTC 111337 >seq683 Length=42213 Score = 269 bits (298), Expect = 6e-70 Identities = 280/369 (76%), Gaps = 26/369 (7%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||| ||| | ||| ||||||||| || | ||| || ||||||| | || ||||| Sbjct 31476 GCATCTGCACAGATATTTCAATTTCACTGAATTTATGGTAGAGACAGCGGGGAAGTCGTT 31417 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 31416 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTCA 31357 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||| |||||||||||||||| |||||||| | || | | ||| ||| Sbjct 31356 GAGTTACAGCCGCCGTTTACTGGGACTTAAGTTAAAGGC--CAA-------AACCTCTCC 31306 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 | |||| ||| |||||||||||||| ||||| |||||||||| |||| ||| ||||||| Sbjct 31305 CTTTAATCTTACAGCACCGGGCAGGTGTCAGTCCCTATACATCTTCTTACGAATTAGCAG 31246 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGA--- 303 | |||||||||||| |||||||||||| || ||||| | ||| ||| | | Sbjct 31245 AGACCTGTGTTTTTACTAAACAGTCGCTACCCCCAATTCTGT---GCCAATCAAAAAAAA 31189 Query 304 -----------CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | ||| ||||||||| ||||||| | |||||||||||||||||||| Sbjct 31188 TTTCTTTTTTTTAATCACTCCTTCTCCCGAAGTTACAGAGTCATTTTGCCGAGTTCCTTT 31129 Query 353 ACAATAGTT 361 || ||| || Sbjct 31128 ACCATAATT 31120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062392733184