Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq684 361 2e-97 seq683 196 1e-47 >seq684 Length=114989 Score = 361 bits (400), Expect = 2e-97 Identities = 382/498 (77%), Gaps = 25/498 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| |||||||||||||||||| || Sbjct 48853 TACGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGGAT 48912 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCC-TCTGACCCCT 119 |||||||||||||| ||||||||||||||||||||| ||| | | | | Sbjct 48913 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGCTAGAAGTGTTGGTTTT 48972 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 || || | ||| |||| | | | ||||||| ||||||| |||||||| Sbjct 48973 CT---GAAA-AGGATTCCTTATTCCGCTTCT-----ACAGGTGGTGCATGGCTGTCGTCA 49023 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 49024 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTTTTAGTTC 49083 Query 240 CCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 || ||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 49084 -------TA--TTG-----TCTAAAAAGACTGCCGGTGACAAACCGGAGGAAGGTGAGGA 49129 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 ||||||||| ||||||||||||||| |||||||||||||| ||||||||| || | Sbjct 49130 CGACGTCAAGTCATCATGCCCCTTACACCCTGGGCTACACACGTCCTACAATGGGTAAGA 49189 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 ||| | || || ||||||| |||| |||| ||| || || ||| | |||| Sbjct 49190 CAATAAGTTGCAAATTCGCGAGGATAAGCTAATCTTTGAAACTTACTCCAAGTACAGATT 49249 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCT 478 | || |||||||||| || |||||| |||||||||||||||||| | ||||| | | Sbjct 49250 GCAGGCTGCAACTCGCCTGCATGAAGGTGGAATCGCTAGTAATCGCTGGTCAGCTACACA 49309 Query 479 ACGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 49310 GCGGTGAATCCGTTCCCG 49327 Score = 361 bits (400), Expect = 2e-97 Identities = 382/498 (77%), Gaps = 25/498 (5%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| |||||||||||||||||| || Sbjct 113957 TACGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGGAT 113898 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCC-TCTGACCCCT 119 |||||||||||||| ||||||||||||||||||||| ||| | | | | Sbjct 113897 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGCTAGAAGTGTTGGTTTT 113838 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 || || | ||| |||| | | | ||||||| ||||||| |||||||| Sbjct 113837 CT---GAAA-AGGATTCCTTATTCCGCTTCT-----ACAGGTGGTGCATGGCTGTCGTCA 113787 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 113786 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTTTTAGTTC 113727 Query 240 CCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 || ||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 113726 -------TA--TTG-----TCTAAAAAGACTGCCGGTGACAAACCGGAGGAAGGTGAGGA 113681 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 ||||||||| ||||||||||||||| |||||||||||||| ||||||||| || | Sbjct 113680 CGACGTCAAGTCATCATGCCCCTTACACCCTGGGCTACACACGTCCTACAATGGGTAAGA 113621 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 ||| | || || ||||||| |||| |||| ||| || || ||| | |||| Sbjct 113620 CAATAAGTTGCAAATTCGCGAGGATAAGCTAATCTTTGAAACTTACTCCAAGTACAGATT 113561 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCT 478 | || |||||||||| || |||||| |||||||||||||||||| | ||||| | | Sbjct 113560 GCAGGCTGCAACTCGCCTGCATGAAGGTGGAATCGCTAGTAATCGCTGGTCAGCTACACA 113501 Query 479 ACGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 113500 GCGGTGAATCCGTTCCCG 113483 >seq683 Length=42213 Score = 196 bits (216), Expect = 1e-47 Identities = 253/344 (74%), Gaps = 14/344 (4%) Strand=Plus/Plus Query 157 CAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGC-AAC 215 |||||| ||||||| |||||| |||||||||||||||||||| |||||| ||| ||| Sbjct 1 CAGGTGCTGCATGGCTGTCGTAAGCTCGTGTCGTGAGATGTTAGGTTAACTCCTTTTAAC 60 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCA--TCATTAAGTTGG----GCACTCTAAGTTGAC 269 | ||| ||||| | || ||||| | | ||| || ||||||||| || Sbjct 61 GGGCGAAACCCCTTTTTTTCGTTGCTACTTAATTTTATTTTTAAAGCACTCTAAAAAAAC 120 Query 270 TGCCGG----TGACAAACCGGAG--GAAGGTGGGGACGACGTCAAATCATCATGCCCCTT 323 ||| | || ||||| ||||||||||| |||||||| || | ||| ||||| Sbjct 121 TGCTCCCTTTTTTTAATTCGGAGAGGAAGGTGGGGATGACGTCAAGTCCTTATGGCCCTT 180 Query 324 ATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGT 383 |||| |||||||||||||||||||||||| || |||| | || || | | | | Sbjct 181 ATGAACTGGGCTACACACGTGCTACAATGGTAAAGACAATAAGAAGTGATAGGGTAACCT 240 Query 384 CAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGA 443 || | |||| |||| || || |||||||||||| | |||||||||| | |||||| Sbjct 241 AAAACCAATCTT-TAAACTTTATCAAAGTTCGGATTGTGGACTGCAACTCGTCCATATGA 299 Query 444 AGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAAT 487 || ||||||| |||||||||| | ||||||||| | |||||||| Sbjct 300 AGGTGGAATCACTAGTAATCGCACATCAGCATGTTGCGGTGAAT 343 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||| |||||||||| ||||||||||||||||||||| || ||||| |||||||||| Sbjct 42067 TACGATCGCAAGGTTGGAACTCAAAGGAATTGACGGGGGCCTATACAAGTGGTGGAGCAT 42126 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||||||| ||| ||||| |||||||||| ||||||||| Sbjct 42127 GTGGTTTAATGCGATAATACGCGCGAAACCTTACCAGTTCTTGACAT 42173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503989712640