Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq23 354 1e-95 seq684 73.4 7e-11 >seq23 Length=719191 Score = 354 bits (392), Expect = 1e-95 Identities = 237/263 (90%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 355677 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTG 355618 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||| || ||| || |||||| | ||||||||||||||||| Sbjct 355617 TTAGTGGGTGAACAATCCTACACTTGGTGACTTCTGCGACACAATGATAGGAAGAGCCGA 355558 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355557 CATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 355498 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| ||||||||| || ||| ||| | ||||||||||||||||| Sbjct 355497 CTGTGGTAACTTTTCTGACACCTCTAG-CTTAAAATTCTAAACACTAAAGGATCGATAGG 355439 Query 271 CCACACTTTCATGGTTTGTATTC 293 ||| |||||| |||||||||| Sbjct 355438 CCATGCTTTCACAGTTTGTATTC 355416 >seq684 Length=114989 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || || |||| ||||| ||||| Sbjct 52393 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACC 52334 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || | | | || | | ||| || ||||||||||||| | |||| | Sbjct 52333 CTTGGGACGTACTACCGCCCC---AGGATGCGATGAGCCGACATCGAGGTGCCAAACCTC 52277 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | | |||| ||||||||| ||||||||| Sbjct 52276 CCCGTCGATGTGGACTCTTGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 52222 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || || |||| ||||| ||||| Sbjct 110417 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACC 110476 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || | | | || | | ||| || ||||||||||||| | |||| | Sbjct 110477 CTTGGGACGTACTACCGCCCC---AGGATGCGATGAGCCGACATCGAGGTGCCAAACCTC 110533 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | | |||| ||||||||| ||||||||| Sbjct 110534 CCCGTCGATGTGGACTCTTGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 110588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854394155904