Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq684 217 3e-54 seq683 111 3e-22 >seq684 Length=114989 Score = 217 bits (240), Expect = 3e-54 Identities = 185/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||| | ||| |||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 52013 GGACACTCCCAGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCG 52072 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||||| | |||||| | |||| |||| | || | |||| |||||||||||| | Sbjct 52073 CACAAAGGTTTCCTCAGATCGGATAGAAATCGATCGAAGAGTGTAAAGGCAAAAGGAAGC 52132 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||||| || |||||| ||||| |||||||||||| |||| ||||||| || | Sbjct 52133 TTGACTGCGAGACGTACAAGTCAAGCAGAGACGAAAGTCGGTCTTAGTGATCCGACGATC 52192 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| ||||| || |||||||| ||||||||||| ||| || |||||| Sbjct 52193 CTGAGTGGAAAGGTCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 52240 Score = 217 bits (240), Expect = 3e-54 Identities = 185/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||| | ||| |||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 110797 GGACACTCCCAGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCG 110738 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||||| | |||||| | |||| |||| | || | |||| |||||||||||| | Sbjct 110737 CACAAAGGTTTCCTCAGATCGGATAGAAATCGATCGAAGAGTGTAAAGGCAAAAGGAAGC 110678 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||||| || |||||| ||||| |||||||||||| |||| ||||||| || | Sbjct 110677 TTGACTGCGAGACGTACAAGTCAAGCAGAGACGAAAGTCGGTCTTAGTGATCCGACGATC 110618 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| ||||| || |||||||| ||||||||||| ||| || |||||| Sbjct 110617 CTGAGTGGAAAGGTCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 110570 >seq683 Length=42213 Score = 111 bits (122), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCA-AAGATACCCT 185 || ||||||||||||||||| ||||| ||| ||||||||||| | ||| || || Sbjct 31638 GGTAGTTTGACTGGGGCGGTGACCTCCTAAAAAGTAACGGAGGTATTTACAAGGTAGGCT 31697 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 || | || || | || | | | |||| || |||| ||| || |||||||| | | Sbjct 31698 CA-TTAGGTTG--ATCCCTAAGAAGAGTGTAATGGCATAAGCCTGCTTGACTGCAAGATT 31754 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 ||| || ||||| |||||||| | | || |||||||| ||| ||| ||||| | | Sbjct 31755 TACAAATCAAGCAGAAACGAAAGTTGAACATAGTGATCCGGTGGTTCTGTGTGGAAAGAC 31814 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||| | ||||||||| ||| || |||||| Sbjct 31815 CATCGCTCAATGGATAAAAGGTACGCTAGGGATA 31848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982393280384