Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq683 132 5e-29 seq684 104 3e-20 >seq683 Length=42213 Score = 132 bits (146), Expect = 5e-29 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | ||||||| |||||| ||| |||| | |||||||||||| Sbjct 31505 GGGTCTTTCCGTCTAGCTGTAGGTAATCTGCATCTGCACAGATATTTCAATTTCACTGAA 31446 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | ||| ||||||| |||||||||| ||||||||||||||||||||| Sbjct 31445 TTTATGGTAGAGACAGCGGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGA 31386 Query 145 CAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||| ||||||| Sbjct 31385 CAAGGAATTTCGCTACCTTTGGACCGT 31359 >seq684 Length=114989 Score = 104 bits (114), Expect = 3e-20 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || || | || |||||||||| || | | ||||||| ||| Sbjct 51855 GGGTCTTTCTGTCCAGGTGCAGGAAGTCCGCATCTTCACAGACAGGTCTATTTCACCGAG 51796 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 51795 C-CTCTCTCCGAGACAGCGTCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 51737 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 51736 ACAAGGAATTTCGCTACCTTAGGACCGTTA 51707 Score = 104 bits (114), Expect = 3e-20 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || || | || |||||||||| || | | ||||||| ||| Sbjct 110955 GGGTCTTTCTGTCCAGGTGCAGGAAGTCCGCATCTTCACAGACAGGTCTATTTCACCGAG 111014 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 111015 C-CTCTCTCCGAGACAGCGTCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 111073 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 111074 ACAAGGAATTTCGCTACCTTAGGACCGTTA 111103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547196374116