Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq684 215 1e-53 >seq684 Length=114989 Score = 215 bits (238), Expect = 1e-53 Identities = 241/316 (76%), Gaps = 11/316 (3%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||| |||| || |||||||||||||||||| || ||||| |||||||||||| Sbjct 48387 CACGCGGTATTG-CTCTGTCAGGCTTTCGCCCATTGCAGAAAATTCCTCACTGCTGCCTC 48329 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | Sbjct 48328 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCGTCCTCTCAGACCAGCT 48269 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAG--GCT 205 || ||||||||||||||| ||| ||||| ||||||||||||||| | | | || || Sbjct 48268 ACTGATCGTCGCCTTGGTAGGCCTTTACCCTACCAACTAGCTAATCAGCCGCGAGCTTCT 48209 Query 206 CATCTGATAGCGCAAGGCCCGAAGG--TCCCCTGC----TTTCTCCCGTAGGACGTATGC 259 | || | || | | | | | | | | | | |||| |||| ||| | ||| Sbjct 48208 CTTCAGGCAGAGATAAATCAGTATGACTTACTTTCTCTTTTTCACCCG-AGGGCACATGG 48150 Query 260 GGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTAC 319 ||| |||||| |||||| ||||||||||| | |||| |||| | | |||| Sbjct 48149 GGTTTTAGCGAATGTTTCCATCCGTTATCCCCCTCCTAAAGGCGAATTCTCACGTGTTAC 48090 Query 320 TCACCCGTCCGCCGCT 335 ||||||||||||| || Sbjct 48089 TCACCCGTCCGCCACT 48074 Score = 215 bits (238), Expect = 1e-53 Identities = 241/316 (76%), Gaps = 11/316 (3%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||| |||| || |||||||||||||||||| || ||||| |||||||||||| Sbjct 114423 CACGCGGTATTG-CTCTGTCAGGCTTTCGCCCATTGCAGAAAATTCCTCACTGCTGCCTC 114481 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | Sbjct 114482 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCGTCCTCTCAGACCAGCT 114541 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAG--GCT 205 || ||||||||||||||| ||| ||||| ||||||||||||||| | | | || || Sbjct 114542 ACTGATCGTCGCCTTGGTAGGCCTTTACCCTACCAACTAGCTAATCAGCCGCGAGCTTCT 114601 Query 206 CATCTGATAGCGCAAGGCCCGAAGG--TCCCCTGC----TTTCTCCCGTAGGACGTATGC 259 | || | || | | | | | | | | | | |||| |||| ||| | ||| Sbjct 114602 CTTCAGGCAGAGATAAATCAGTATGACTTACTTTCTCTTTTTCACCCG-AGGGCACATGG 114660 Query 260 GGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTAC 319 ||| |||||| |||||| ||||||||||| | |||| |||| | | |||| Sbjct 114661 GGTTTTAGCGAATGTTTCCATCCGTTATCCCCCTCCTAAAGGCGAATTCTCACGTGTTAC 114720 Query 320 TCACCCGTCCGCCGCT 335 ||||||||||||| || Sbjct 114721 TCACCCGTCCGCCACT 114736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071992667520