Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq684 248 3e-63 seq683 114 5e-23 >seq684 Length=114989 Score = 248 bits (274), Expect = 3e-63 Identities = 342/469 (73%), Gaps = 21/469 (4%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| |||||| ||||||||||||||||||||| | | || ||||||| ||||| Sbjct 50654 CGCTGCGCCTAAACACATTTCGGGGAGAACCAGCTAGCTCCGGATTCGATTGGCATTTCA 50595 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| || | |||||||| | ||| |||||| ||||||| | Sbjct 50594 CCCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCAGTTCGGACCTCCACTTAG 50535 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCG--T 313 | ||||| |||||| |||| ||||| ||||||| | ||||||||| | | | Sbjct 50534 TTTTACCTAAGCTTCATCCTGGTCATGGTTAGATCATCCGGGTTCGGGTCTGTACCTAAT 50475 Query 314 GCCACTCATACGCCCTAT-TCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACC 372 | || | ||| | | || ||||||||| ||| |||| | | | |||||| Sbjct 50474 GACATTG---CGCTCGTTATCAAGCTCGCTTTCACTATGGCTTCGT-ATTC---TTAACC 50422 Query 373 TCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA--CCTGGTA 430 ||| | | ||| |||| |||||||||||||| |||||||| |||| | || | Sbjct 50421 CCGCCATTAGATACAAG-TCGCCGGCTCATTCTTCAACAGGCACGCAGTCAGGCTTGACA 50363 Query 431 CCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490 || || | |||| ||| | |||||||| |||||||| || || ||||||| Sbjct 50362 ACTCGTAGCC-CTTCTGCTGC------TTGTAGGCTTCTGGTTTCATGTTCT-TTTCACT 50311 Query 491 CCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAG 550 |||| || ||||| ||||||||||||||||||||||||| || | |||||||||| || Sbjct 50310 CCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCATTCAG 50251 Query 551 GAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | ||||||| ||| |||||||| | |||||||||| ||||||| Sbjct 50250 TAATATTTAGCCTTGCAAGGTGGTCCTTGCGGATTCACACGGAATTTCA 50202 Score = 248 bits (274), Expect = 3e-63 Identities = 342/469 (73%), Gaps = 21/469 (4%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| |||||| ||||||||||||||||||||| | | || ||||||| ||||| Sbjct 112156 CGCTGCGCCTAAACACATTTCGGGGAGAACCAGCTAGCTCCGGATTCGATTGGCATTTCA 112215 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| || | |||||||| | ||| |||||| ||||||| | Sbjct 112216 CCCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCAGTTCGGACCTCCACTTAG 112275 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCG--T 313 | ||||| |||||| |||| ||||| ||||||| | ||||||||| | | | Sbjct 112276 TTTTACCTAAGCTTCATCCTGGTCATGGTTAGATCATCCGGGTTCGGGTCTGTACCTAAT 112335 Query 314 GCCACTCATACGCCCTAT-TCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACC 372 | || | ||| | | || ||||||||| ||| |||| | | | |||||| Sbjct 112336 GACATTG---CGCTCGTTATCAAGCTCGCTTTCACTATGGCTTCGT-ATTC---TTAACC 112388 Query 373 TCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA--CCTGGTA 430 ||| | | ||| |||| |||||||||||||| |||||||| |||| | || | Sbjct 112389 CCGCCATTAGATACAAG-TCGCCGGCTCATTCTTCAACAGGCACGCAGTCAGGCTTGACA 112447 Query 431 CCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490 || || | |||| ||| | |||||||| |||||||| || || ||||||| Sbjct 112448 ACTCGTAGCC-CTTCTGCTGC------TTGTAGGCTTCTGGTTTCATGTTCT-TTTCACT 112499 Query 491 CCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAG 550 |||| || ||||| ||||||||||||||||||||||||| || | |||||||||| || Sbjct 112500 CCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCATTCAG 112559 Query 551 GAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | ||||||| ||| |||||||| | |||||||||| ||||||| Sbjct 112560 TAATATTTAGCCTTGCAAGGTGGTCCTTGCGGATTCACACGGAATTTCA 112608 >seq683 Length=42213 Score = 114 bits (126), Expect = 5e-23 Identities = 127/169 (75%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 || ||||| |||||| ||| ||||||||||| | |||||||||| |||||||||||||| Sbjct 30422 ACTTAAATAGATTTCGCGGAAAACCAGCTATCTCTAAGTTTGATTAGCCTTTCACCCCTA 30363 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTAC 261 ||||| ||||||| | |||||||| || | ||||||||||||| | || | Sbjct 30362 ACCACAAATCATCCCAGTATTTTTCAACATACACGAGTTCGGTCCTCCAATTAATGTTTC 30303 Query 262 C---CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTT 307 | ||||||||| ||| | |||||||||| | ||||||| || Sbjct 30302 CATTAAATTTTCAACCTGTTCATAGTTAGATCACTTAGTTTCGGGTTTT 30254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817587567616