Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq684 212 2e-52 seq683 86.0 2e-14 >seq684 Length=114989 Score = 212 bits (234), Expect = 2e-52 Identities = 312/419 (74%), Gaps = 22/419 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| |||| |||||| |||||| ||||| || Sbjct 50587 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCAGTTCGGACCTCCACTTAGTT-TT 50531 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| || |||| ||| || |||||| |||| || ||||||| | || | Sbjct 50530 ACCTAAGCTT-CATCCTGGTCAT-GGTTAGATCATCCGGGTT-CGGGTCTGTA-CCTAAT 50475 Query 129 GACTAGACGCCC--TAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTT 186 ||| ||| | || ||| |||||||| | ||| | || | ||||| |||| | Sbjct 50474 GACATTGCGCTCGTTATCAAG-CTCGCTTT-CACTATGGCTTCG-TATTC--TTAACCCC 50420 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAA 244 |||| | | | ||||||| | | |||| | ||| ||| ||||||||| | |||| Sbjct 50419 -GCCATTAGATACAAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCAGGCTTGACAAC 50361 Query 245 --GTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 || | | | | ||||||||| || | ||||||| | ||| ||||||||||||| || Sbjct 50360 TCGTAGCCCTTCTGCTGCTTGTAGGCTTCTGGTTTCATGTTCT-TTTCACTCCCCTC-CC 50303 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| |||||||||||||||||| ||||||||||||||| |||||| ||||| Sbjct 50302 GGGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCATTCAGTAATATTT 50243 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||| | | |||||| | ||||| || | |||| |||||||| | ||||||| Sbjct 50242 AGCCTTGCAAGGTGGTCCTTGCGGATTCACACGGAATTTCACGTGCTCCATGCTACTCG 50184 Score = 212 bits (234), Expect = 2e-52 Identities = 312/419 (74%), Gaps = 22/419 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| |||| |||||| |||||| ||||| || Sbjct 112223 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCAGTTCGGACCTCCACTTAGTT-TT 112279 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| || |||| ||| || |||||| |||| || ||||||| | || | Sbjct 112280 ACCTAAGCTT-CATCCTGGTCAT-GGTTAGATCATCCGGGTT-CGGGTCTGTA-CCTAAT 112335 Query 129 GACTAGACGCCC--TAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTT 186 ||| ||| | || ||| |||||||| | ||| | || | ||||| |||| | Sbjct 112336 GACATTGCGCTCGTTATCAAG-CTCGCTTT-CACTATGGCTTCG-TATTC--TTAACCCC 112390 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAA 244 |||| | | | ||||||| | | |||| | ||| ||| ||||||||| | |||| Sbjct 112391 -GCCATTAGATACAAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCAGGCTTGACAAC 112449 Query 245 --GTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 || | | | | ||||||||| || | ||||||| | ||| ||||||||||||| || Sbjct 112450 TCGTAGCCCTTCTGCTGCTTGTAGGCTTCTGGTTTCATGTTCT-TTTCACTCCCCTC-CC 112507 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| |||||||||||||||||| ||||||||||||||| |||||| ||||| Sbjct 112508 GGGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCATTCAGTAATATTT 112567 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||| | | |||||| | ||||| || | |||| |||||||| | ||||||| Sbjct 112568 AGCCTTGCAAGGTGGTCCTTGCGGATTCACACGGAATTTCACGTGCTCCATGCTACTCG 112626 >seq683 Length=42213 Score = 86.0 bits (94), Expect = 2e-14 Identities = 123/167 (74%), Gaps = 15/167 (9%) Strand=Plus/Minus Query 179 TTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC 238 |||||||| || | |||| || || |||||||||||| |||||||||||| |||| | Sbjct 30207 TTAAGCTT-GCTTGTAAAAAAAACTCACTGACCCATTATGCAAAAGGTACGCCGTCA-CT 30150 Query 239 AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTC 298 || ||| ||||| |||||| || ||| ||| | | || ||||| ||| Sbjct 30149 AATAAA----GCTCCGACTGCTATTAAACATTGAATTTTA--AACT-TTTCA-----CTC 30102 Query 299 TCCGGGGTTC-TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCG 344 || |||| ||||| |||||||||||||||||| ||| ||||||| Sbjct 30101 TCAAAAGTTCTTTTTCACCTTTCCCTCACGGTACTTGTTTACTATCG 30055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241591507456