Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq684 194 3e-47 seq683 131 3e-28 >seq684 Length=114989 Score = 194 bits (214), Expect = 3e-47 Identities = 229/309 (74%), Gaps = 27/309 (9%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| || || || |||||||||||||||||||||||||| ||| Sbjct 48370 TCAGGCTTTCGCCCATTGCAGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCG 48311 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||| ||| |||||| | || |||||||| || ||||| |||||||| |||||| Sbjct 48310 TGTCTCAGTTCCAGTGTGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGT 48251 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTT---TCAGCGATAAAT 189 ||| ||| | |||||||| |||||| ||||||||| |||| ||| ||||||| Sbjct 48250 AGGCCTTTACCCTACCAACTAGCTAATCAGCCGCGAGCTTCTCTTCAGGCAGAGATAAAT 48191 Query 190 CTTTGGTCAAAGAATGA-TGCCATCCTCT------------GACATTATGCGGTATTAGC 236 | || |||| | | | |||| | || ||| ||| ||||| Sbjct 48190 C---------AGTATGACTTACTTTCTCTTTTTCACCCGAGGGCA-CATGGGGTTTTAGC 48141 Query 237 GTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGT 296 | ||||||| |||||| || ||| |||||| | | |||||||||||||||||||| Sbjct 48140 GAATGTTTCCATCCGTTATCCCCCTCCTAAAGGC-GAATTCTCACGTGTTACTCACCCGT 48082 Query 297 CCGCCACTA 305 ||||||||| Sbjct 48081 CCGCCACTA 48073 Score = 194 bits (214), Expect = 3e-47 Identities = 229/309 (74%), Gaps = 27/309 (9%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| || || || |||||||||||||||||||||||||| ||| Sbjct 114440 TCAGGCTTTCGCCCATTGCAGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCG 114499 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||| ||| |||||| | || |||||||| || ||||| |||||||| |||||| Sbjct 114500 TGTCTCAGTTCCAGTGTGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGT 114559 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTT---TCAGCGATAAAT 189 ||| ||| | |||||||| |||||| ||||||||| |||| ||| ||||||| Sbjct 114560 AGGCCTTTACCCTACCAACTAGCTAATCAGCCGCGAGCTTCTCTTCAGGCAGAGATAAAT 114619 Query 190 CTTTGGTCAAAGAATGA-TGCCATCCTCT------------GACATTATGCGGTATTAGC 236 | || |||| | | | |||| | || ||| ||| ||||| Sbjct 114620 C---------AGTATGACTTACTTTCTCTTTTTCACCCGAGGGCA-CATGGGGTTTTAGC 114669 Query 237 GTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGT 296 | ||||||| |||||| || ||| |||||| | | |||||||||||||||||||| Sbjct 114670 GAATGTTTCCATCCGTTATCCCCCTCCTAAAGGC-GAATTCTCACGTGTTACTCACCCGT 114728 Query 297 CCGCCACTA 305 ||||||||| Sbjct 114729 CCGCCACTA 114737 >seq683 Length=42213 Score = 131 bits (144), Expect = 3e-28 Identities = 124/158 (78%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | |||| | |||||| ||| || || |||||||| |||| |||| || Sbjct 41603 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCTCACTGCTGGCTCCAAATGGAGCCT 41544 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||| ||||||||||||| |||||| |||||||||||||| | |||| |||| | || Sbjct 41543 GGGCCTTGTCTCAGTCCCAGTGTGGCTGTTCAACCTCTCAGAACAGCTAAGGATCTTAGG 41484 Query 127 CTTGGTGGGCTATTATC----TCACCAACTACCTAATC 160 |||||| |||| ||| | ||||||||||||||| Sbjct 41483 CTTGGTAGGCTTTTACCCAAAATACCAACTACCTAATC 41446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998393170944