Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq684 215 1e-53 >seq684 Length=114989 Score = 215 bits (238), Expect = 1e-53 Identities = 300/408 (74%), Gaps = 12/408 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| || |||| |||| || ||| | | | | Sbjct 51203 CGACTACGCCTCTCGGCCTCGCCTTAGGTCCTGACTAACCCTTCGCGGACGAGCCTTCCG 51144 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||| | | |||| | | |||||| |||| | ||||||||| ||| Sbjct 51143 AAGGAATCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGCTACTCAAGCCG 51084 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC--ACTGACAC 177 |||||||||| | |||| | | | || | | | |||||| |||| || Sbjct 51083 ACATTCTCACTTCTGTTTCGTCCAACTC-CGCTCTCGCTAAATCTTCACTCTACTG-CAG 51026 Query 178 GACGCTCCCCTACCCA--AC-CACACAGGT-TGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||||| | || | | || | | |||| |||||||| ||| ||||| | | Sbjct 51025 AACGCTCCCCTACCGATAACTCTTAAAGCTATCCCACGGCTTCGGCAGATGACTTA-GTC 50967 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTT-CAAGG 292 |||||| ||| ||||||| || || |||||||||||||||||||||||||| ||||| Sbjct 50966 CCGCTA-ATTTTCGGCGCAAGATTGCTCGACCAGTGAGCTATTACGCACTCTTTTCAAGG 50908 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 | |||||||| |||| |||||||||||||| | || ||| |||||| |||| | Sbjct 50907 GTTGCTGCTTCTAAGCAAACCTCCTGGTTGTTTCAGCCTTCTCACTTCCTTTGTCACTTA 50848 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | || || || ||||||||||| | || |||||||||||||||||||| Sbjct 50847 GCCATCATTTGGGGGCCTTAGCCGGTGGTCTGGGCTGTTTCCCTCTCG 50800 Score = 215 bits (238), Expect = 1e-53 Identities = 300/408 (74%), Gaps = 12/408 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| || |||| |||| || ||| | | | | Sbjct 111607 CGACTACGCCTCTCGGCCTCGCCTTAGGTCCTGACTAACCCTTCGCGGACGAGCCTTCCG 111666 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||| | | |||| | | |||||| |||| | ||||||||| ||| Sbjct 111667 AAGGAATCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGCTACTCAAGCCG 111726 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC--ACTGACAC 177 |||||||||| | |||| | | | || | | | |||||| |||| || Sbjct 111727 ACATTCTCACTTCTGTTTCGTCCAACTC-CGCTCTCGCTAAATCTTCACTCTACTG-CAG 111784 Query 178 GACGCTCCCCTACCCA--AC-CACACAGGT-TGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||||| | || | | || | | |||| |||||||| ||| ||||| | | Sbjct 111785 AACGCTCCCCTACCGATAACTCTTAAAGCTATCCCACGGCTTCGGCAGATGACTTA-GTC 111843 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTT-CAAGG 292 |||||| ||| ||||||| || || |||||||||||||||||||||||||| ||||| Sbjct 111844 CCGCTA-ATTTTCGGCGCAAGATTGCTCGACCAGTGAGCTATTACGCACTCTTTTCAAGG 111902 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 | |||||||| |||| |||||||||||||| | || ||| |||||| |||| | Sbjct 111903 GTTGCTGCTTCTAAGCAAACCTCCTGGTTGTTTCAGCCTTCTCACTTCCTTTGTCACTTA 111962 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | || || || ||||||||||| | || |||||||||||||||||||| Sbjct 111963 GCCATCATTTGGGGGCCTTAGCCGGTGGTCTGGGCTGTTTCCCTCTCG 112010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177591945216