Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq684 104 2e-20 seq683 93.3 4e-17 >seq684 Length=114989 Score = 104 bits (114), Expect = 2e-20 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||| | ||| || | |||| |||||||| ||||||| Sbjct 49264 CGAGTTGCAGCCTGCAATCTGTACTTGGAGTAAGTTTCAAAGATTAGCTTATCCTCGCGA 49205 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 || || | ||| | |||||||| |||||||| ||||| |||||| ||| Sbjct 49204 ATTTGCAACTTATTGTCTTACCCATTGTAGGACGTGTGTAGCCCAGGGTGTAAGGGGCAT 49145 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||| ||| ||||||||||||||||||||| Sbjct 49144 GATGACTTGACGTCGTCCTCACCTTCCTCCGGTTTGTCAC 49105 Score = 104 bits (114), Expect = 2e-20 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||| | ||| || | |||| |||||||| ||||||| Sbjct 113546 CGAGTTGCAGCCTGCAATCTGTACTTGGAGTAAGTTTCAAAGATTAGCTTATCCTCGCGA 113605 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 || || | ||| | |||||||| |||||||| ||||| |||||| ||| Sbjct 113606 ATTTGCAACTTATTGTCTTACCCATTGTAGGACGTGTGTAGCCCAGGGTGTAAGGGGCAT 113665 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||| ||| ||||||||||||||||||||| Sbjct 113666 GATGACTTGACGTCGTCCTCACCTTCCTCCGGTTTGTCAC 113705 >seq683 Length=42213 Score = 93.3 bits (102), Expect = 4e-17 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 ||| | |||||||||| ||||||| ||||| |||||||||||| |||||||||||| Sbjct 218 TGTCTTTACCATTGTAGCACGTGTGTAGCCCAGTTCATAAGGGCCATAAGGACTTGACGT 159 Query 135 CATCCCCACCTTCCTC 150 |||||||||||||||| Sbjct 158 CATCCCCACCTTCCTC 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415997243480