Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq684 150 3e-34 seq683 100 5e-19 >seq684 Length=114989 Score = 150 bits (166), Expect = 3e-34 Identities = 197/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| || || |||||| | | |||| | |||||||||| ||||||| | Sbjct 48731 GCTTTCGTCTCTGAGTGTCAGTAATAGCCCAGTAGAGTGCCTTCGCCATCGGTGTTCTTT 48672 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | ||||||||||||||||||||| ||| | |||||| | || || | ||||||| Sbjct 48671 CCAATATCTACGCATTTCACCGCTCCACTGGAAATTCCCTCTACCCCTACTATACTCAAG 48612 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | ||||| | ||||||||| || ||| ||| ||||| Sbjct 48611 TCTCCTAGTTTCTACTGCAGATTTGAGGTTGAGCCTCAAGATTTAACAGTAGACTTAAGA 48552 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || ||| || | |||||| |||| |||||||||||||| ||||| || ||| ||| Sbjct 48551 AACCACCTGCAGACGCTTTACGCCCAGTAAATCCGGATAACACTTGCATCCCCCGTCTTA 48492 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 ||||||||||||||||| ||||||||| |||| Sbjct 48491 CCGCGGCTGCTGGCACGGAGTTAGCCGATGCTT 48459 Score = 150 bits (166), Expect = 3e-34 Identities = 197/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| || || |||||| | | |||| | |||||||||| ||||||| | Sbjct 114079 GCTTTCGTCTCTGAGTGTCAGTAATAGCCCAGTAGAGTGCCTTCGCCATCGGTGTTCTTT 114138 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | ||||||||||||||||||||| ||| | |||||| | || || | ||||||| Sbjct 114139 CCAATATCTACGCATTTCACCGCTCCACTGGAAATTCCCTCTACCCCTACTATACTCAAG 114198 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | ||||| | ||||||||| || ||| ||| ||||| Sbjct 114199 TCTCCTAGTTTCTACTGCAGATTTGAGGTTGAGCCTCAAGATTTAACAGTAGACTTAAGA 114258 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || ||| || | |||||| |||| |||||||||||||| ||||| || ||| ||| Sbjct 114259 AACCACCTGCAGACGCTTTACGCCCAGTAAATCCGGATAACACTTGCATCCCCCGTCTTA 114318 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 ||||||||||||||||| ||||||||| |||| Sbjct 114319 CCGCGGCTGCTGGCACGGAGTTAGCCGATGCTT 114351 >seq683 Length=42213 Score = 100 bits (110), Expect = 5e-19 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 190 GCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGC 249 |||||| |||||||| |||| | | ||||||||||||| ||| ||| ||| ||||||| Sbjct 41769 GCCTACGGACCCTTTACGCCCAGTCATTCCGGATAACGCTCGCCCCCTTCGTCTTACCGC 41710 Query 250 GGCTGCTGGCACGTAGTTAGCCGTGGCT 277 ||||||||||||| ||||||||| |||| Sbjct 41709 GGCTGCTGGCACGAAGTTAGCCGGGGCT 41682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828794508164