Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq684 268 1e-69 seq683 181 2e-43 >seq684 Length=114989 Score = 268 bits (296), Expect = 1e-69 Identities = 225/275 (82%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| |||||| ||||| || ||||| ||||| Sbjct 52565 GAGGTTGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCGTTCCATACATAGCTACCCAG 52506 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||||||| ||| || ||| ||||| || ||||||||||||| Sbjct 52505 CGTTTACCGTTGGCACGATAACTGGTACACTAGCGGTATGTCCTTCTCGGTCCTCTCGTA 52446 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| || | ||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 52445 CTAGAGAAGGATCCTCTCAATACTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 52386 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||| Sbjct 52385 CGACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 52326 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | ||||||||||| || |||||||||||| Sbjct 52325 GTACTACCGCCCCAGGATGCGATGAGCCGACATCG 52291 Score = 268 bits (296), Expect = 1e-69 Identities = 225/275 (82%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| |||||| ||||| || ||||| ||||| Sbjct 110245 GAGGTTGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCGTTCCATACATAGCTACCCAG 110304 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||||||| ||| || ||| ||||| || ||||||||||||| Sbjct 110305 CGTTTACCGTTGGCACGATAACTGGTACACTAGCGGTATGTCCTTCTCGGTCCTCTCGTA 110364 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| || | ||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 110365 CTAGAGAAGGATCCTCTCAATACTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 110424 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||| Sbjct 110425 CGACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 110484 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | ||||||||||| || |||||||||||| Sbjct 110485 GTACTACCGCCCCAGGATGCGATGAGCCGACATCG 110519 >seq683 Length=42213 Score = 181 bits (200), Expect = 2e-43 Identities = 198/261 (76%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| |||||| ||||| | ||| |||||| || || |||| ||| | Sbjct 32157 CTTATATGCTTTCAGCAATTATCTAGTATAAATGTAGCTTTCCGGCCATGCCTTTGATAA 32098 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGAC--AGCTCC 134 ||||| ||| |||| | ||| ||| |||||||||||||||||| | || | Sbjct 32097 AACAACCGGTATACCATGGATTTACTTTTCCTGGTCCTCTCGTACTAAGGTCTAAGTT-- 32040 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 ||||| |||| ||||| || |||||||||||||||||||| ||||||||| |||| Sbjct 32039 TCTCAGTTTTCTGACGCCTACAGTAGATAGGGACCGAACTGTCTCACGACGTTCTAAACC 31980 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 |||||| ||| || | || | ||||||||||| ||||||||| ||| ||||||| ||| Sbjct 31979 CAGCTCACGTACCACCTTCCTCGGCGAACAGCCGAACCCTTGGAACCACCTTCAGCTCCA 31920 Query 255 GGATGAGACGAGCCGACATCG 275 ||||| || |||||||||||| Sbjct 31919 GGATGTGATGAGCCGACATCG 31899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780794826224