Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq684 232 2e-58 seq683 152 1e-34 >seq684 Length=114989 Score = 232 bits (256), Expect = 2e-58 Identities = 306/419 (73%), Gaps = 19/419 (5%) Strand=Plus/Minus Query 5 TTTACAACCC-GAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||| | | | | |||| || ||||||| || ||| |||||||| ||||||| Sbjct 48414 TTTACAACTCAGTAAGTCTTCATCCCCCACGCGGTATTGCTCTGTCAGGCTTTCGCCCAT 48355 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || || ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48354 TGCAGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 48295 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| || ||||||||||||||||| ||||||||||| ||| |||| |||||| || Sbjct 48294 TGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAGGCCTTTACCCTACC 48235 Query 184 AACTAGCTAATC-CCATCTGGGT--TCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 |||||||||||| | | | | || || | || || | | | | | | || | Sbjct 48234 AACTAGCTAATCAGCCGCGAGCTTCTCTTCAGGCAGAGATAAATCAGTATGACTTACTTT 48175 Query 241 ---TTGGTCTTGCGACG--TTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTC 295 || || ||| | ||| ||| ||||| | ||||||| |||||||||||| Sbjct 48174 CTCTTTTTCACCCGAGGGCACATGGGGTTTTAGCGAATGTTTCCATCCGTTATCCCCCTC 48115 Query 296 CATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGC 355 | |||| ||| || |||||||||||||||||||| || | || | Sbjct 48114 CTAAAGGCGAATTCTCACGTGTTACTCACCCGTCCGCCACT---------AGAATTAACC 48064 Query 356 TGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | || ||||||||||||||||||||||| | ||||||||||||| ||||| Sbjct 48063 GGGAT-TAATTCTCGTTCGACTTGCATGTGTTAGGCATACCGCCAGCGTTCATCCTGAG 48006 Score = 232 bits (256), Expect = 2e-58 Identities = 306/419 (73%), Gaps = 19/419 (5%) Strand=Plus/Plus Query 5 TTTACAACCC-GAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||| | | | | |||| || ||||||| || ||| |||||||| ||||||| Sbjct 114396 TTTACAACTCAGTAAGTCTTCATCCCCCACGCGGTATTGCTCTGTCAGGCTTTCGCCCAT 114455 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || || ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114456 TGCAGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 114515 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| || ||||||||||||||||| ||||||||||| ||| |||| |||||| || Sbjct 114516 TGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAGGCCTTTACCCTACC 114575 Query 184 AACTAGCTAATC-CCATCTGGGT--TCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 |||||||||||| | | | | || || | || || | | | | | | || | Sbjct 114576 AACTAGCTAATCAGCCGCGAGCTTCTCTTCAGGCAGAGATAAATCAGTATGACTTACTTT 114635 Query 241 ---TTGGTCTTGCGACG--TTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTC 295 || || ||| | ||| ||| ||||| | ||||||| |||||||||||| Sbjct 114636 CTCTTTTTCACCCGAGGGCACATGGGGTTTTAGCGAATGTTTCCATCCGTTATCCCCCTC 114695 Query 296 CATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGC 355 | |||| ||| || |||||||||||||||||||| || | || | Sbjct 114696 CTAAAGGCGAATTCTCACGTGTTACTCACCCGTCCGCCACT---------AGAATTAACC 114746 Query 356 TGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | || ||||||||||||||||||||||| | ||||||||||||| ||||| Sbjct 114747 GGGAT-TAATTCTCGTTCGACTTGCATGTGTTAGGCATACCGCCAGCGTTCATCCTGAG 114804 >seq683 Length=42213 Score = 152 bits (168), Expect = 1e-34 Identities = 151/195 (77%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 6 TTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTG 65 ||||||| ||| |||||||||| || | | || |||| |||| |||| ||| ||||| Sbjct 41639 TTACAACTTGAAAGCCTTCTTCACTCATGTAGTATTGCTGGATCAAGCTTTCGCTCATTG 41580 Query 66 TGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 125 | ||| ||||| |||||||| |||| |||| |||| || ||||||||| |||||||| Sbjct 41579 TCCAAAATTCCTCACTGCTGGCTCCAAATGGAGCCTGGGCCTTGTCTCAGTCCCAGTGTG 41520 Query 126 GCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC----CG 181 |||| ||| ||||||||| |||||| ||||| | | || ||| ||| |||||| Sbjct 41519 GCTGTTCAACCTCTCAGAACAGCTAAGGATCTTAGGCTTGGTAGGCTTTTACCCAAAATA 41460 Query 182 CCAACTAGCTAATCC 196 ||||||| ||||||| Sbjct 41459 CCAACTACCTAATCC 41445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222391638784