Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq684 336 7e-90 seq683 255 2e-65 >seq684 Length=114989 Score = 336 bits (372), Expect = 7e-90 Identities = 286/346 (83%), Gaps = 6/346 (2%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||| | Sbjct 48216 CGCGGCTGATTAGCTAGTTGGTAGGGTAAAGGCCTACCAAGGCGACGATCAGTAGCTGGT 48275 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 48276 CTGAGAGGACGATCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAG 48335 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||| ||||| || |||||||| ||||||||| ||||| ||||||| | ||||| Sbjct 48336 CAGTGAGGAATTTTCTGCAATGGGCGAAAGCCTGACAGAGCAATACCGCGTGGGGGATGA 48395 Query 340 AGGCCTTC-GGGTCGTAAAGCTCTGT-CCTCAAGGAAGA--TAATGACGGTACTTGAGGA 395 || | | | | || ||||| ||| || || |||||||| |||||||||||| || Sbjct 48396 AGACTTACTGAGTTGTAAACCTCGGTACCCTAAGGAAGAAGATATGACGGTACTTAGGGT 48455 Query 396 GG-AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 454 || |||| ||||||||| |||||||||||||||||||| ||| || || || ||||| Sbjct 48456 GGAAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATGCAAGTGTTAT 48515 Query 455 CCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| ||||| |||||||||| || | ||||||||||||||||| Sbjct 48516 CCGGATTTACT-GGGCGTAAAGCGTCTGCAGGTGGTTTCTTAAGTC 48560 Score = 336 bits (372), Expect = 7e-90 Identities = 286/346 (83%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||| | Sbjct 114594 CGCGGCTGATTAGCTAGTTGGTAGGGTAAAGGCCTACCAAGGCGACGATCAGTAGCTGGT 114535 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 114534 CTGAGAGGACGATCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAG 114475 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||| ||||| || |||||||| ||||||||| ||||| ||||||| | ||||| Sbjct 114474 CAGTGAGGAATTTTCTGCAATGGGCGAAAGCCTGACAGAGCAATACCGCGTGGGGGATGA 114415 Query 340 AGGCCTTC-GGGTCGTAAAGCTCTGT-CCTCAAGGAAGA--TAATGACGGTACTTGAGGA 395 || | | | | || ||||| ||| || || |||||||| |||||||||||| || Sbjct 114414 AGACTTACTGAGTTGTAAACCTCGGTACCCTAAGGAAGAAGATATGACGGTACTTAGGGT 114355 Query 396 GG-AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 454 || |||| ||||||||| |||||||||||||||||||| ||| || || || ||||| Sbjct 114354 GGAAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATGCAAGTGTTAT 114295 Query 455 CCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| ||||| |||||||||| || | ||||||||||||||||| Sbjct 114294 CCGGATTTACT-GGGCGTAAAGCGTCTGCAGGTGGTTTCTTAAGTC 114250 >seq683 Length=42213 Score = 255 bits (282), Expect = 2e-65 Identities = 252/324 (78%), Gaps = 5/324 (2%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAA----GGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 |||||| ||||||||| ||||| || ||||||| | | |||| |||| | ||| Sbjct 41446 GATTAGGTAGTTGGTATTTTGGGTAAAAGCCTACCAAGCCTAAGATCCTTAGCTGTTCTG 41505 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||| | |||||| ||| ||||||||| || ||| |||| |||| |||||| Sbjct 41506 AGAGGTTGAACAGCCACACTGGGACTGAGACAAGGCCCAGGCTCCATTTGGAGCCAGCAG 41565 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 || ||||| ||| |||||| || ||||| |||| |||||| | | |||| || ||||| Sbjct 41566 TGAGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACTACATGAGTGAAGAAGG 41625 Query 343 CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCC 402 | ||| || |||| |||| | | |||| ||||||||| ||||| | | |||| Sbjct 41626 CTTTCAAGTTGTAACACTCTTTGGTTGAGGAGGATAATGACAGTACTCAACAAAATAGCC 41685 Query 403 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||| Sbjct 41686 CCGGCTAACTTCGTGCCAGCAGCCGCGGTAAGACGAAGGGGGCGAGCGTTATCCGGAATG 41745 Query 463 ACTGGGGCGTAAAGGGTGCGTAGG 486 ||| ||||||||||||| |||||| Sbjct 41746 ACT-GGGCGTAAAGGGTCCGTAGG 41768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497589756416