Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq684 269 6e-70 seq683 187 6e-45 >seq684 Length=114989 Score = 269 bits (298), Expect = 6e-70 Identities = 308/410 (75%), Gaps = 3/410 (1%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAA-GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 59 ||||| || |||| || ||||||||| |||||||||||||||||||| ||| || | Sbjct 48446 TACTTAGGGTGGAAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATG 48505 Query 60 CTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGG 119 | || |||||||||| ||||||||||||||| || | ||||||||||||||||| | Sbjct 48506 CAAGTGTTATCCGGATTTACTGGGCGTAAAGCGTCTGCAGGTGGTTTCTTAAGTCTACTG 48565 Query 120 TGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAG 179 | ||| | ||||||||| | |||| | |||||| | || |||| || || Sbjct 48566 TTAAATCTTGAGGCTCAACCTCAAATCTGCAGTAGAAACTAGGAGACTTGAGTATAGTAG 48625 Query 180 GGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTG 239 ||| | |||||| | |||| |||||||||||||||||||||| | | ||||||| || Sbjct 48626 GGGTAGAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATG 48685 Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 |||||||| | |||| || | ||||||||| || ||||||| |||||||||| Sbjct 48686 GCGAAGGCACTCTACTGGGCTATTACTGACACTCAGAGACGAAAGCTAGGGGAGCAAATG 48745 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT- 358 ||||||||||||| ||||||| ||||||||||||| ||||| | ||| || || || Sbjct 48746 GGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTCGATGT-TGGACGTATC 48804 Query 359 AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | || | ||| ||||| ||||||| || ||||||||||| Sbjct 48805 GACCCGTTCAGTATCTTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 48854 Score = 269 bits (298), Expect = 6e-70 Identities = 308/410 (75%), Gaps = 3/410 (1%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAA-GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 59 ||||| || |||| || ||||||||| |||||||||||||||||||| ||| || | Sbjct 114364 TACTTAGGGTGGAAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATG 114305 Query 60 CTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGG 119 | || |||||||||| ||||||||||||||| || | ||||||||||||||||| | Sbjct 114304 CAAGTGTTATCCGGATTTACTGGGCGTAAAGCGTCTGCAGGTGGTTTCTTAAGTCTACTG 114245 Query 120 TGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAG 179 | ||| | ||||||||| | |||| | |||||| | || |||| || || Sbjct 114244 TTAAATCTTGAGGCTCAACCTCAAATCTGCAGTAGAAACTAGGAGACTTGAGTATAGTAG 114185 Query 180 GGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTG 239 ||| | |||||| | |||| |||||||||||||||||||||| | | ||||||| || Sbjct 114184 GGGTAGAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATG 114125 Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 |||||||| | |||| || | ||||||||| || ||||||| |||||||||| Sbjct 114124 GCGAAGGCACTCTACTGGGCTATTACTGACACTCAGAGACGAAAGCTAGGGGAGCAAATG 114065 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT- 358 ||||||||||||| ||||||| ||||||||||||| ||||| | ||| || || || Sbjct 114064 GGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTCGATGT-TGGACGTATC 114006 Query 359 AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | || | ||| ||||| ||||||| || ||||||||||| Sbjct 114005 GACCCGTTCAGTATCTTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 113956 >seq683 Length=42213 Score = 187 bits (206), Expect = 6e-45 Identities = 238/325 (73%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 14 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73 |||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||| Sbjct 41682 AGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAAGACGAAGGGGGCGAGCGTTATCCGG 41741 Query 74 AATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGC 133 ||| |||||||||||||||| |||||| | | || || || || ||| | || Sbjct 41742 AATGACTGGGCGTAAAGGGTCCGTAGGCAGCATTTTTTGTTGGAAGTTAAATAAAAAAGC 41801 Query 134 TCAACCCCGGGACTGCTTTTGAAAC-TGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 | || | | |||| | |||| | | | | |||| || | || |||| Sbjct 41802 TTAA-CTTTTTTCCGCTTCTAAAACGTAAATGCTTTGAGTTTGATAGAAGATAGCAGAAT 41860 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | | || ||||| || | |||| | | ||||| | ||| |||||||||||| Sbjct 41861 TTCACAAGGAGGGGTGATATCCAGAGATCTGTGAAGGAATATCAGATGCGAAGGCGGCTA 41920 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 || || |||||| ||||| ||||||| |||||||||||||||||||||||||| Sbjct 41921 TCTAGATCAACACTGACGTTGAGGGACGAAAGCATGGGGAGCAAACAGGATTAGATACCC 41980 Query 313 TGGTAGTCCACGCCGTAAACGATGA 337 |||||||||| ||| |||| ||||| Sbjct 41981 TGGTAGTCCATGCCCTAAAAGATGA 42005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203191770112