Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq684 230 8e-58 seq683 134 5e-29 >seq684 Length=114989 Score = 230 bits (254), Expect = 8e-58 Identities = 389/551 (71%), Gaps = 38/551 (7%) Strand=Plus/Plus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||| || ||||||| ||||| ||||||||||| | ||||| || |||| Sbjct 50484 AGACCCGAACCCGGATGATCTAACCATGACCAGGATGAAGCTTAGGTAAAACTAAGTGGA 50543 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 ||||||||| ||| |||||||||||| || ||||||| ||||| ||||||||||| || Sbjct 50544 GGTCCGAACTGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 50603 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAG--GTAGTGCCTCAAGTA 211 || | || ||| |||||||||||| |||||| | ||||| | || | | | | Sbjct 50604 AATCGAATCCGGAGCTAGCTGGTTCTCCCCGAAATGTGTTTAGGCGCAGCGGTTGACAGA 50663 Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCTAGGG--GGTCATTGCGACTTACCAAACCA 269 || || |||||| ||||||||| || ||| ||| ||| || ||||||| | Sbjct 50664 AAAC--TCAGGGGTAAAGCACTGTTTCGGTGCGGGCTGGTAATT-CG--GTACCAAATCG 50718 Query 270 TTGCAAACTCCGAATGCGCATCAGT---TTTACCGCGGGAGTGAG--GGCA--------- 315 |||||||| |||| | | ||| | | | |||| ||| | || Sbjct 50719 AGGCAAACTCTGAATAC---TGAGTGCCCCTCCGTCAGGAGGGAGGCGTCAACTAGTAAG 50775 Query 316 ----TGGGTGCTAAGGTCC-GTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCC 370 |||| | |||| ||| ||| ||||||| || | || ||| | | ||||||||| Sbjct 50776 ACTCTGGGGGATAAGCTCCAGTG-TCGAGAGGGAAACAGCCCAGACCACCGGCTAAGGCC 50834 Query 371 CCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGG 430 || |||||| ||||||| || || ||||| || ||| | ||| | |||| ||| | Sbjct 50835 CCCAAATGATGGCTAAGT--GACAAAGGAAGTGAGAAGGCTGAAACAACCAGGAGGTTTG 50892 Query 431 CTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCG 490 ||| |||||||| | | | ||||||||||||| |||||||| |||||| | || ||| Sbjct 50893 CTTAGAAGCAGCAACCCTTGAAAAGAGTGCGTAATAGCTCACTGGTCGAGCAATCTTGCG 50952 Query 491 TGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT--CATTTATA-TGATC 547 || ||| | |||| | ||||| ||| ||||||| ||||||| | || | | | ||| Sbjct 50953 CCGAAAATTAGCGGG-ACTAAGTCATCTGCCGAAGCCGTGGGATAGCTTTAAGAGTTATC 51011 Query 548 GGTAGGGGAGC 558 ||||||||||| Sbjct 51012 GGTAGGGGAGC 51022 Score = 230 bits (254), Expect = 8e-58 Identities = 389/551 (71%), Gaps = 38/551 (7%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||| || ||||||| ||||| ||||||||||| | ||||| || |||| Sbjct 112326 AGACCCGAACCCGGATGATCTAACCATGACCAGGATGAAGCTTAGGTAAAACTAAGTGGA 112267 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 ||||||||| ||| |||||||||||| || ||||||| ||||| ||||||||||| || Sbjct 112266 GGTCCGAACTGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 112207 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAG--GTAGTGCCTCAAGTA 211 || | || ||| |||||||||||| |||||| | ||||| | || | | | | Sbjct 112206 AATCGAATCCGGAGCTAGCTGGTTCTCCCCGAAATGTGTTTAGGCGCAGCGGTTGACAGA 112147 Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCTAGGG--GGTCATTGCGACTTACCAAACCA 269 || || |||||| ||||||||| || ||| ||| ||| || ||||||| | Sbjct 112146 AAAC--TCAGGGGTAAAGCACTGTTTCGGTGCGGGCTGGTAATT-CG--GTACCAAATCG 112092 Query 270 TTGCAAACTCCGAATGCGCATCAGT---TTTACCGCGGGAGTGAG--GGCA--------- 315 |||||||| |||| | | ||| | | | |||| ||| | || Sbjct 112091 AGGCAAACTCTGAATAC---TGAGTGCCCCTCCGTCAGGAGGGAGGCGTCAACTAGTAAG 112035 Query 316 ----TGGGTGCTAAGGTCC-GTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCC 370 |||| | |||| ||| ||| ||||||| || | || ||| | | ||||||||| Sbjct 112034 ACTCTGGGGGATAAGCTCCAGTG-TCGAGAGGGAAACAGCCCAGACCACCGGCTAAGGCC 111976 Query 371 CCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGG 430 || |||||| ||||||| || || ||||| || ||| | ||| | |||| ||| | Sbjct 111975 CCCAAATGATGGCTAAGT--GACAAAGGAAGTGAGAAGGCTGAAACAACCAGGAGGTTTG 111918 Query 431 CTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCG 490 ||| |||||||| | | | ||||||||||||| |||||||| |||||| | || ||| Sbjct 111917 CTTAGAAGCAGCAACCCTTGAAAAGAGTGCGTAATAGCTCACTGGTCGAGCAATCTTGCG 111858 Query 491 TGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT--CATTTATA-TGATC 547 || ||| | |||| | ||||| ||| ||||||| ||||||| | || | | | ||| Sbjct 111857 CCGAAAATTAGCGGG-ACTAAGTCATCTGCCGAAGCCGTGGGATAGCTTTAAGAGTTATC 111799 Query 548 GGTAGGGGAGC 558 ||||||||||| Sbjct 111798 GGTAGGGGAGC 111788 >seq683 Length=42213 Score = 134 bits (148), Expect = 5e-29 Identities = 184/254 (72%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 36 ACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGC---GGTAACACGCCCTGG 92 ||||||||| |||||||||| | ||| |||| |||| | || |||| ||| Sbjct 30257 ACCCGAAACTAAGTGATCTAACTATGAACAGGTTGAAAATTTAATGGAAACATTAATTGG 30316 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| |||||| | |||||||||||| ||||||| ||||| |||||||||||||| Sbjct 30317 AGGACCGAACTCGTGTATGTTGAAAAATACTGGGATGATTTGTGGTTAGGGGTGAAAGGC 30376 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTG-CCTCAAGTA 211 ||| ||||||| || |||||||||| || ||||| ||||||| |||| | |||| | Sbjct 30377 TAATCAAACTTAGAGATAGCTGGTTTTCCGCGAAATCTATTTAAGTAGAGTGTTCAAAAA 30436 Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGA-CTTACCAAACCAT 270 | | ||||||||||||| ||||||||| || || |||||| ||| Sbjct 30437 AGAAAAATTGGGGTAGAGCACTCCATAAGCTAGGGGGGTTTTCGGATCTTACCGAACTTA 30496 Query 271 TGCAAACTCCGAAT 284 | ||||||||||| Sbjct 30497 AGGAAACTCCGAAT 30510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689588443136