Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02-
18] 684 sequences; 27,589,342 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq684 120 6e-25
>seq684
Length=114989
Score = 120 bits (132), Expect = 6e-25
Identities = 171/237 (72%), Gaps = 9/237 (4%)
Strand=Plus/Plus
Query 9 TGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG 68
||| |||| ||||||| | | | ||||||||||||| | | |||||| ||| |||
Sbjct 49773 TGGGGGATACCTTGGCATTCAGAAGCGATGAAGGACGCGATGACCGGCGATACGCTCCGG 49832
Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128
|||| | ||||| | |||||||||| || |||||||||| || ||| | | | |
Sbjct 49833 GGAGCGGGCAAAAAG-CTTTGATCCGGAGGTTTCCGAATGAGGCAACTC----CATAGA- 49886
Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187
| | | | | ||||||||| | | || ||||||| || |||||||||||||| ||
Sbjct 49887 --ACTTCTTCCCGAATACATAATGAAGAAAGAGCGAACCTGGGGAACTGAAACATCTTAG 49944
Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244
|| | ||||||| ||| || ||||||| ||||| |||||||||| |||||
Sbjct 49945 TACCCAGAGGAAAAAAAAGTAAAAACGATTCCCTTAGTAGCGGCGAGCGAACTGGGA 50001
Score = 120 bits (132), Expect = 6e-25
Identities = 171/237 (72%), Gaps = 9/237 (4%)
Strand=Plus/Minus
Query 9 TGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG 68
||| |||| ||||||| | | | ||||||||||||| | | |||||| ||| |||
Sbjct 113037 TGGGGGATACCTTGGCATTCAGAAGCGATGAAGGACGCGATGACCGGCGATACGCTCCGG 112978
Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128
|||| | ||||| | |||||||||| || |||||||||| || ||| | | | |
Sbjct 112977 GGAGCGGGCAAAAAG-CTTTGATCCGGAGGTTTCCGAATGAGGCAACTC----CATAGA- 112924
Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187
| | | | | ||||||||| | | || ||||||| || |||||||||||||| ||
Sbjct 112923 --ACTTCTTCCCGAATACATAATGAAGAAAGAGCGAACCTGGGGAACTGAAACATCTTAG 112866
Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244
|| | ||||||| ||| || ||||||| ||||| |||||||||| |||||
Sbjct 112865 TACCCAGAGGAAAAAAAAGTAAAAACGATTCCCTTAGTAGCGGCGAGCGAACTGGGA 112809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918393718144
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |