Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq23 628 8e-178 >seq23 Length=719191 Score = 628 bits (696), Expect = 8e-178 Identities = 465/536 (87%), Gaps = 10/536 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||||||||||||| |||||| Sbjct 355382 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTAACCTTAGGACACCTGTGTTATG 355323 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||| |||| | | |||| Sbjct 355322 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGTTGTCTCCCGCGTAGATC 355263 Query 127 G--GCCCGCGAAGGAC-CTTAACGCCAGAAAATGGT-CGGTGAAG--ACCAGT-TCCGCT 179 | | || |||||| | ||||| | |||| || | |||||| || | || | Sbjct 355262 GCGGGCCTCGAAGGCCGCTTAAATCTAGAACCAGGCGCCGTGAAGCGACTGGACTCTACG 355203 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 || || ||||||||| ||| || | |||||||||||||| ||||| | |||| Sbjct 355202 CCACGGAATAAGTAAAACAACATTACGAGTAGTGGTATTTCATCGTCGCCGGA---GCTC 355146 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 355145 CCACTTATGCTACACCTCATAAGTCATTTCACAACGTCGGACTAGAGTCAAGCTCAACAG 355086 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 355085 GGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATG 355026 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 355025 GCAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAATTAGATGACG 354966 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354965 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 354906 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354905 AATTCCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 354850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635188815232