Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq684 241 4e-61 seq683 163 1e-37 >seq684 Length=114989 Score = 241 bits (266), Expect = 4e-61 Identities = 401/569 (70%), Gaps = 24/569 (4%) Strand=Plus/Minus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 |||||||| |||||||||||||||| |||| ||| |||||||| | |||| | | Sbjct 52154 GACTTGTACGTCTCGCAGTCAAGCTTCCTTTTGCCTTTACACTCTTCGATCGATTTCTAT 52095 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 || |||||| |||||||| ||||||||||||| |||| ||||| | ||||||||||| Sbjct 52094 CCGATCTGAGGAAACCTTTGTGCGCCTCCGTTACCTTTTAGGAGG-CGACCGCCCCAGTC 52036 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCC-ACT 181 ||||| |||||| || | ||||| | ||| ||| | || | || ||| |||| | Sbjct 52035 AAACTGCCCACCTGGGAGTGTCCTCTCCCCGGATTACGGTAGAGAGTGAGA-ATCCGAGC 51977 Query 182 ACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCATCATA 238 |||||||||| ||| | | ||||| | |||| || | ||| Sbjct 51976 TTTAAAAGAGTGGTATCTCACGATTGGCTCCAAAGATCCCACAAGAC---CTTTTTCAAT 51920 Query 239 GTCTCCCACCTATCCTACACAA--ACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG 296 | ||||||||||| || | ||| | | | || | |||| ||||| | ||||||| Sbjct 51919 GCCTCCCACCTATTCTGCGCAAGTAAAGACCAGATT--CAATCCCAAGATGCAGTGAAGC 51862 Query 297 TCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTC 355 | | |||||||| |||| | || ||| ||||||| || | | ||||| Sbjct 51861 TTCATAGGGTCTTTCTGTCCAGGTGCAGGAAGTCCGCATCTTCACAGACAGGTCTATTTC 51802 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 |||| |||| | |||||||| | |||||||||| ||||||| ||||||||||| Sbjct 51801 ACCGAGCCTCTCTCCGAGACAGCGTCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTT 51742 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||| Sbjct 51741 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGG 51682 Query 476 CTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGC 535 ||||| | | || | | || | | | || ||| |||||||||| || Sbjct 51681 CTTCAGTAATTAGCTTTGCTTAC------GCGAACCAAC--GTC--TTTAACCTTCCGGC 51632 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTCG 564 || ||||||||||||| || |||| ||| Sbjct 51631 ACTGGGCAGGCGTCAGCCCCCATACATCG 51603 Score = 241 bits (266), Expect = 4e-61 Identities = 401/569 (70%), Gaps = 24/569 (4%) Strand=Plus/Plus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 |||||||| |||||||||||||||| |||| ||| |||||||| | |||| | | Sbjct 110656 GACTTGTACGTCTCGCAGTCAAGCTTCCTTTTGCCTTTACACTCTTCGATCGATTTCTAT 110715 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 || |||||| |||||||| ||||||||||||| |||| ||||| | ||||||||||| Sbjct 110716 CCGATCTGAGGAAACCTTTGTGCGCCTCCGTTACCTTTTAGGAGG-CGACCGCCCCAGTC 110774 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCC-ACT 181 ||||| |||||| || | ||||| | ||| ||| | || | || ||| |||| | Sbjct 110775 AAACTGCCCACCTGGGAGTGTCCTCTCCCCGGATTACGGTAGAGAGTGAGA-ATCCGAGC 110833 Query 182 ACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCATCATA 238 |||||||||| ||| | | ||||| | |||| || | ||| Sbjct 110834 TTTAAAAGAGTGGTATCTCACGATTGGCTCCAAAGATCCCACAAGAC---CTTTTTCAAT 110890 Query 239 GTCTCCCACCTATCCTACACAA--ACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG 296 | ||||||||||| || | ||| | | | || | |||| ||||| | ||||||| Sbjct 110891 GCCTCCCACCTATTCTGCGCAAGTAAAGACCAGATT--CAATCCCAAGATGCAGTGAAGC 110948 Query 297 TCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTC 355 | | |||||||| |||| | || ||| ||||||| || | | ||||| Sbjct 110949 TTCATAGGGTCTTTCTGTCCAGGTGCAGGAAGTCCGCATCTTCACAGACAGGTCTATTTC 111008 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 |||| |||| | |||||||| | |||||||||| ||||||| ||||||||||| Sbjct 111009 ACCGAGCCTCTCTCCGAGACAGCGTCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTT 111068 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||| Sbjct 111069 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGG 111128 Query 476 CTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGC 535 ||||| | | || | | || | | | || ||| |||||||||| || Sbjct 111129 CTTCAGTAATTAGCTTTGCTTAC------GCGAACCAAC--GTC--TTTAACCTTCCGGC 111178 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTCG 564 || ||||||||||||| || |||| ||| Sbjct 111179 ACTGGGCAGGCGTCAGCCCCCATACATCG 111207 >seq683 Length=42213 Score = 163 bits (180), Expect = 1e-37 Identities = 202/278 (73%), Gaps = 20/278 (7%) Strand=Plus/Minus Query 287 ATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTA 345 ||||| ||||| | |||||||| |||| || | | || |||||| || || Sbjct 31521 ATAGTAAAGGTGCATAGGGTCTTTCCGTCTAGCTGTAGGTAATCTGCATCTGCACAGATA 31462 Query 346 CTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAG 405 | ||||||||| | | |||| |||||||| ||| ||||||||| |||||| ||||| Sbjct 31461 TTTCAATTTCACTGAATTTATGGTAGAGACAGCGGGGAAGTCGTTACACCATTCATGCAG 31402 Query 406 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCG 465 ||||||||||||||||||||||||||||||||||| ||| || | |||||| |||||| Sbjct 31401 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTCAGAGTTACAGCCGCCG 31342 Query 466 TTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTA 525 ||||||||| ||| | ||| ||| | ||| | ||| ||| Sbjct 31341 TTTACTGGGACTTAAGTTAAAGGCC---AAAACCTC----------------TCCCTTTA 31301 Query 526 ACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 | ||| |||||||||||||| |||||||| ||||| || Sbjct 31300 ATCTTACAGCACCGGGCAGGTGTCAGTCCCTATACATC 31263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702388355584