Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq23 502 7e-140 >seq23 Length=719191 Score = 502 bits (556), Expect = 7e-140 Identities = 422/512 (82%), Gaps = 17/512 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || ||||||||||| | ||| ||| ||| | || |||||||||||||||||| Sbjct 350485 GTTCTCATTCCAATAGCCAGAGTTAAAC---CCCGGCATTGTTATTTATTGTCACTACCT 350429 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 350428 CCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTC 350369 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| Sbjct 350368 TCTCAGGCTCCCTCTCCGGAATCGAACCCCAATTCTCCGTTACCCGTTAGAGCCATGGTA 350309 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || ||||||||| |||| |||||||||||||| |||||||| | |||| |||| Sbjct 350308 GGCCAATACCCTACCATCCAAAGCTGATAGGGCAGAAACTTGAATGATTCGTCGCTGGCT 350249 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG---GGCGTT 297 ||||| ||||| || ||||||| |||| |||||| || | | || || Sbjct 350248 --AGGCC-GGCGATCCGCAAAGTTATCATGATTCACCACAATACCGGGTTGCCCCGCATT 350192 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATT 352 || ||| ||||||||||||||| ||||||||| ||| ||| ||| ||||||||| Sbjct 350191 GG-TTTCTATCTAATAAATACATCCCTTCCGACAAGCAGTTGGGATTTGATGCATGTATT 350133 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| ||||||||||||||||||| | |||||||||||||| |||||||| Sbjct 350132 AGCTCTAGAATTACTACGGTTATCCATGTAGTAAAGGACTATCAAATAAACTATAACTGA 350073 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTT 472 | ||||||||||||||||| |||| | | | | |||| || |||| |||||||||| Sbjct 350072 TATAATGAGCCATTCGCAGATTCA--GAGAAAACTCTTTATTCTCAGACGTGCATGGCTT 350015 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||| ||||||||||||||| Sbjct 350014 AATCTTTGAGACAAGCGTATGACTACTGGCAG 349983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510389668864