Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 374 7e-99 seq29 183 2e-41 >seq6 Length=1241202 Score = 374 bits (414), Expect = 7e-99 Identities = 1163/1770 (66%), Gaps = 60/1770 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| ||||||||||| || |||| || | | ||||| || |||||||||||||| Sbjct 395323 ATCCACCGTGAACTGTATGGCATCCGCCTTGGGCCGGGTCCGTAGGTAGTACATGCCGGT 395264 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 |||||| || ||| | |||||| ||||| || | | | |||| |||| | Sbjct 395263 CTTGAGCCCCTTCTTCCAGGAATAGAAGTGCATGGAGGTGAGCTGTGCAGGCGTCGGATT 395204 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 ||||| ||| ||||| | ||||| |||| |||||| || || || || ||| Sbjct 395203 GGCCAAATGGATATTGAGAGACTGCGACTGACAGATGTAGGCGCCGCGGTCGGCGGCCTG 395144 Query 65257 GTCAATGATACGACGTC--CCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 ||| || | | || || ||| |||||||| || |||||||||||| | ||| Sbjct 395143 GTCGATCACGC-ACTTCTGCCGG-ATCTCCCACACTGTCTTGTACAGGTCCTTGAGCTCC 395086 Query 65315 ATTGGAAT-CT--CCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC 65371 || || || || || | ||||||||| || | | ||||| |||| || Sbjct 395085 CGAGGGATGCTGGCCACATT---CTGGACTGAGCCCCTGTTGCCCATAATTTGATTTCG- 395030 Query 65372 ATCGACT-CTGA---CCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGAT 65427 |||| | || ||||| || ||||| || | | | || || || | Sbjct 395029 ---GACTTCAGAAGTCCACAGGCCTTGGTCGATGAGGTCGCGGAGCAGGTACTTGTTCAC 394973 Query 65428 GACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAA 65487 || ||| ||||| | || || |||||| || ||||| || |||| || |||| Sbjct 394972 CACCGTGAATTCGCCCGCCAACACGCGACGGGAGTACATGTTCGATGTGAAAGGCTCAAC 394913 Query 65488 GGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 || || ||||||| || || || ||||||||||| || |||||||| |||| ||| | Sbjct 394912 AGACTCGTTGTTGCCCAGGATCTGCGCAGTAGATGCGGTAGGCATGGGTGCGAGCAATAG 394853 Query 65548 TGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGG 65607 |||||| || | |||| | | | ||| || || || |||||| ||| || Sbjct 394852 TGAGTTGCGGACACCGTGCTCCTGCACTTTGAAGCGTAAACCGGCCCAGTCCCAG--CGA 394795 Query 65608 TTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667 || | | || || |||||| || ||| | | || | || || || Sbjct 394794 GTTGAGGGGGTCA----CGCCCCACATGTCGAATTGGAAGACGCCCTTGCTCATGGGGGA 394739 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG-GTCTCGAGTG 65726 ||| ||| | ||||| ||||||| | | || | | || | | ||| | | Sbjct 394738 GCCGGCGAAGGTCTCGTAGGGACCCTCCTTCATCGCGATCTC-CATCGACGCCTCTACCG 394680 Query 65727 CGGCAAAATAAATGGTCTCGAAAATG-CGTCGATTAAGTTCACGTGCCTCATCGCTCTCG 65785 | | || || ||||||||||||||| | | | ||||| | | ||||| |||| Sbjct 394679 CCCCGAAGTACATGGTCTCGAAAATGTCCTTG-TTAAGCTGCTGGGCCTCCGGAGACTCG 394621 Query 65786 TACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGA 65845 | || | | |||| || || | ||| |||| ||| || || || || |||||||| Sbjct 394620 AATGGGAATCGCATCTTGATGAAGGCGTCCGCCAAACCCTGCACGCCGATCCCGATGGGG 394561 Query 65846 CGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATG 65905 || || |||| || || || || || || ||||||||||| ||||| || || | | Sbjct 394560 CGGTGTCGCATGTTCGAGCGCCTGGCTTCCTCGACAGGGTAGTAGTTGATGTCTATGACG 394501 Query 65906 CGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGT 65965 || |||| || ||||||||||| | | ||| || | | | || || || Sbjct 394500 CGGTTCAGGTTTCGTGTCACCACCTTCGTGATTTCATACAGCCGCTGCAGGTCGTAA-GT 394442 Query 65966 TTAGGACGA--TCGGGAGTGCCGGACACCACAAACTTGG--GAAGG--GCAAGA------ 66013 || || || | | ||||| || | ||||| ||| | | ||| Sbjct 394441 ---GGGCGTCTTCCCGC-TACCGGAGCCCTCCC-CTTGGATGAATGCGGAAAGGTTCACG 394387 Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || ||||||||||| || | ||| || || | || ||||||| || || |||||| Sbjct 394386 GAGGCCAGGTTGCAGACCGCGACCTCATCGGGCGACGTGTACTCGATGATCTCCGTGCAC 394327 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 ||||| | ||||||||||| ||||| || || || | ||||| || ||| Sbjct 394326 AGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGGCGTCC 394267 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||| ||| |||||| || ||||| ||||| || ||||| || | || ||| ||| || Sbjct 394266 TTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCGAACCA--GA 394209 Query 66194 GC-GC-GTGCCTTCA---CCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGA 66248 || || | ||||| | || | ||| | || || || ||||| |||||| Sbjct 394208 GCTGCTGGGCCTTAATAACCTTGCGTGCTTTCCCACTCTTC---TCGTAGCTGGCGTAGA 394152 Query 66249 GGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCA 66308 | || | || || || || || || | ||| | || |||| || || || | | Sbjct 394151 GCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCACTCGTTGGGGCAAAAAA 394092 Query 66309 GCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGT 66368 | ||||| || || || || || || ||||| || || || || |||||||||||| Sbjct 394091 GGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGTCCAGAGGGCGT 394032 Query 66369 AGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACT 66428 |||| ||||| ||||| || | | ||| ||||||| || || |||| ||| ||||| | Sbjct 394031 AGAACAGATCACGTGCACGCTCCAACTCGTTGCCGTGGTTCTTACGCAGGTCCAGGAATT 393972 Query 66429 CAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGC 66488 |||||||||| |||||||| || || |||||||||||||| || ||| | || ||||| | Sbjct 393971 CAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAACCCTTGCGCTTGCCTC 393912 Query 66489 CACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGT 66548 | || |||||||||||||| || || |||||| || || | ||| ||||||| |||| Sbjct 393911 CGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAGGTACGATGCCGT 393852 Query 66549 TAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCA 66608 | || |||| || | || ||| ||| |||| ||||| || | ||| | | Sbjct 393851 TGGAGGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGATGGATA 393792 Query 66609 GACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGC 66668 ||||| ||||| || || || |||||||| || | | || | | |||| Sbjct 393791 CGCCAATCCCACCCGCAAATTTGGAAATGGCAGCGCATTGCTTGAGGGTGTCGTAGATGC 393732 Query 66669 CGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTG 66728 |||| |||||||| |||| |||||||||||| |||| || |||||||| |||| Sbjct 393731 CGTCGATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAGAGTTGGGGCCGCGGTG 393672 Query 66729 TGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGT--AAAGTAATGGCGAGACATGTAATT 66786 || |||| ||| || || || ||||| ||||| ||||| | | | |||||| ||| Sbjct 393671 TGCCGGCATTGAAAAGTGTAGGCGTAGCATGCGTGAAAAGT--TTGAGCGACATGAGATT 393614 Query 66787 GTACGTCTCGATGACAGCATCAATGTTTTC 66816 ||| ||||| | | || |||||||| || Sbjct 393613 GTAGGTCTCCAGCGCCGCGTCAATGTTCTC 393584 >seq29 Length=316797 Score = 183 bits (202), Expect = 2e-41 Identities = 382/565 (68%), Gaps = 8/565 (1%) Strand=Plus/Plus Query 65989 CACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGC 66048 ||| || || ||||| || | | || || ||||||||||| || | ||| || | Sbjct 130752 CACAACGAATTTGGGTAGCACCACCGACGCCAGGTTGCAGACCGCCACCTCTTCCGCGCT 130811 Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 || || | ||| || |||||||||||||| | | ||||||||||| |||||||| Sbjct 130812 CGTGTATTGGACGATCTCGGTGCACAGATTCGAGGACTTGATGGTGCCCAAGTTCTGTTG 130871 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| || |||||||||| |||||| || ||||| ||||||| || Sbjct 130872 GTTGCTCTTCAGGTTGCAAGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTG 130931 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTT 66227 || || | |||||| ||| | | | || ||| || | | | | | || | Sbjct 130932 CGAGTCCAAGATGGCAAACCACAAGTCCTGAGCACGCACTGT-CTTCTTGACTCGGCCCT 130990 Query 66228 TGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATG 66287 |||||||| | | || |||| ||||| | || || | |||| | Sbjct 130991 CTCGTTCGTATTTTAAATATAGGTCCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGG 131050 Query 66288 GACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATA 66347 | |||| | |||||||| || ||||| ||||||| || || | ||| || | Sbjct 131051 GGCACTGATCGGGACACATGAGGGACCAGGTCCCATCCTCCTCCACCCTCTCCATGAAGA 131110 Query 66348 GATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGAT 66407 | || || ||||| || | ||||||||||| || || || |||||| | ||||| | Sbjct 131111 GGTCGGGAATCCATAGTCCATAGAAGAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGT 131170 Query 66408 TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467 | || |||| ||| || | ||||||||||| || ||||| || |||||||||||||| | Sbjct 131171 TCTTCCGCAGGTCCAGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAA 131230 Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGA 66524 | | || | ||||| || || ||||| |||||||| || ||| || ||||| Sbjct 131231 AGGCCCCTGGCCTCTTGCCTCCCCCCTGGTCCACGTAGCGCGCCGTGAC---GTCGAAGA 131287 Query 66525 CACGCAACATCGGTACGAGCCCGTT 66549 | | | ||| || || || ||||| Sbjct 131288 CCCTGAGCATGGGCACCAGACCGTT 131312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564685773760