Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq684 695 0.0 >seq684 Length=114989 Score = 695 bits (770), Expect = 0.0 Identities = 732/957 (76%), Gaps = 12/957 (1%) Strand=Plus/Plus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACC 188937 |||||| | || |||||||||||||||| | ||||||||||| | | | || || Sbjct 68490 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 68549 Query 188938 ATCTGCTTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAA 188997 | |||||||||| |||| || |||| ||||| || ||||| || ||||| ||||| ||| Sbjct 68550 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 68609 Query 188998 CCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCA 189057 || || ||||| ||||| | || ||||||||||| ||| | ||||| ||| | || Sbjct 68610 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 68669 Query 189058 TCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGG 189117 || ||||| |||||| ||||||||||||| | |||||||| || || | || || ||| Sbjct 68670 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 68729 Query 189118 CTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGC- 189176 || |||||||||||||||| |||||| ||||| || |||||| | | || | || || Sbjct 68730 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGG--TGTA-GCT 68786 Query 189177 --CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC 189234 ||||||||| ||||| |||||||| |||||| | || |||||||||||||| | | Sbjct 68787 TGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTC 68846 Query 189235 ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGT 189294 | |||| ||| || || || || |||||| ||||| || | | || || | || Sbjct 68847 GTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGA 68906 Query 189295 CAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTT 189354 |||||| |||||||| | ||||| || |||||| ||| || ||||||| |||| | Sbjct 68907 CAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTA 68966 Query 189355 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGT 189414 || ||||||||||| |||||||| || |||||||| ||||| ||| || || || ||| Sbjct 68967 GTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGT 69026 Query 189415 GTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTT 189474 || || ||||| || | ||| |||||||| ||||| || || || ||| | | Sbjct 69027 GTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATC 69086 Query 189475 CGTGAAACCACTGAA-ACCGAGTCCCAG--AACTATGGTTACAAGTTTGGACAAGAAGAA 189531 |||||||| |||| || | || | | ||||| |||||||| ||||||||||||||| Sbjct 69087 CGTGAAAC---TGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAA 69143 Query 189532 GAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCA 189591 ||||| ||||||||||| ||||| || || || || || ||| | ||||||||||| ||| Sbjct 69144 GAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCA 69203 Query 189592 TCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATC 189651 ||||||||||| ||| | | ||||||||| | ||||| |||||||| || |||||| Sbjct 69204 AGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATC 69263 Query 189652 TGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAAT 189711 ||||| || || || || | ||||| |||||||||||| | || || ||||||||||| Sbjct 69264 TGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAAC 69323 Query 189712 CAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGT 189771 ||||| || ||||| | ||||||||||| | ||||| ||||| ||| || |||||||| Sbjct 69324 CAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGT 69383 Query 189772 GCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGAT 189828 |||| | | ||||||||||| ||||| || |||||||| |||||||||||||| ||| Sbjct 69384 GCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 69440 Score = 542 bits (600), Expect = 4e-149 Identities = 736/1021 (72%), Gaps = 4/1021 (0%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 |||||| | | ||||||||| | ||||||||||| || || ||| | |||||||| || Sbjct 37906 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 37965 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 | | | ||||| || || | ||| ||| ||||||| ||| | || || || || ||| Sbjct 37966 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 38025 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCT 190165 | |||| |||||||| || ||| | || | |||| | ||||| ||| || || | Sbjct 38026 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTT 38084 Query 190166 TACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 190225 || | ||||| ||||| ||||| || |||||||||||| | | || | ||||| Sbjct 38085 AACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGG 38144 Query 190226 TCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGT 190285 || || | ||||| ||||| | ||| | ||| | || ||| | ||| ||||||| Sbjct 38145 ACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGT 38204 Query 190286 GGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTT-CGTCAGTTTGAACTGGCAC 190344 || | || ||||| || | ||||||||||| || || || || |||||| | || | Sbjct 38205 CGCATTACATGGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTC 38263 Query 190345 GTCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTG 190404 |||| | ||||| ||||| || ||||| ||||| || || || |||||||| || || | Sbjct 38264 GTCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCG 38323 Query 190405 TTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCG 190464 || || || | ||||| ||| | || ||| | ||||||||||| || || || | Sbjct 38324 TTTCTGTATTCTTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTG 38383 Query 190465 GTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGA 190524 | || ||||| || ||||| ||||| | ||||| || || |||||||||||||| || | Sbjct 38384 GAGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTA 38443 Query 190525 ACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCC 190584 | || ||||||||||||||||| ||||| || | || || |||||| | || ||||| | Sbjct 38444 ATCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTC 38503 Query 190585 ATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAG 190644 |||| | |||||||| || || || | ||||||||||| || || || || | Sbjct 38504 ATGGAGCTACTGTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTG 38563 Query 190645 CATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGT 190704 | ||| | |||||| ||||| || ||||| ||||| || || ||| | ||||||| Sbjct 38564 CTTTCACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGT 38623 Query 190705 CTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 190764 ||||||| ||||||||||| || ||| || | ||| | |||||||| ||| | |||| Sbjct 38624 CTCAAATTTTTGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTG 38683 Query 190765 TTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 190824 |||| || | ||| | ||||| ||| | ||||| | ||| | || | ||| | Sbjct 38684 TTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAA 38743 Query 190825 GTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTT 190884 | || |||||||||||||| |||||| | | ||||| ||||||||||| || || |||| Sbjct 38744 GAGCATATGACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTT 38803 Query 190885 TTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATC 190944 | || || |||||||| | || || |||||| || | |||||| |||| | || | Sbjct 38804 TCTATACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACC 38863 Query 190945 AACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGAT 191004 |||| ||||| ||||||||||| ||||| || || || ||| | || ||||| || | || Sbjct 38864 AACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 38923 Query 191005 A 191005 | Sbjct 38924 A 38924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634074578616000