Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq684 740 0.0 >seq684 Length=114989 Score = 740 bits (820), Expect = 0.0 Identities = 760/990 (77%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 160563 TGGGAACAATTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTC 160622 ||||| | |||||| ||| | ||| ||| | || ||| | ||| ||||||||||| Sbjct 68454 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 68513 Query 160623 GGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTT 160682 ||||| | |||||||| || | || |||| || |||||| || | || ||| | Sbjct 68514 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 68573 Query 160683 GCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTAT 160742 || || || || || || ||||| |||||||||||||| || ||||| ||||| | || Sbjct 68574 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 68633 Query 160743 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTC 160802 ||||||||||| ||| | ||||| ||| |||| ||| ||||| |||||| |||||||| Sbjct 68634 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 68693 Query 160803 TACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAA 160862 ||||| ||||||||||||| ||| | || |||||||| ||||| ||||||||||||||| Sbjct 68694 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 68753 Query 160863 CTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTT 160922 || || ||||| |||||| | | || | ||||||||||| || || ||||||||| Sbjct 68754 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 68813 Query 160923 TCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCT 160982 |||||| | || ||||| || ||||| | ||| || | || || || || ||||| Sbjct 68814 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 68873 Query 160983 GCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCC 161042 || |||||||||||| | | || || |||| |||||| ||||||||||||||||| Sbjct 68874 GCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 68933 Query 161043 CTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTG 161102 | |||||||||||||| |||||||||||| | || ||||| |||||||||||||| || Sbjct 68934 TTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 68993 Query 161103 ATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCA 161162 |||||||| ||||| ||| |||||||||||||| || ||||| ||| | ||| ||| Sbjct 68994 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCA 69053 Query 161163 ATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTG-AGAACGAGTCCCA 161221 ||||| ||||| || || || ||| | | |||||| |||| ||| | || | Sbjct 69054 ATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAA---ACTGAAGACGGTGTATCT 69110 Query 161222 G--AACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCAT 161279 | ||||| |||||||| ||||| ||||||||||| || ||||||||||| ||||| || Sbjct 69111 GCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 69170 Query 161280 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCAC 161339 |||||||| || || | |||||||||||||| ||||||||||| ||| | || ||| Sbjct 69171 GGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACAC 69230 Query 161340 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACC 161399 |||||| | || || ||||| ||||| ||||||||||| ||||| ||||| | ||| Sbjct 69231 TTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACA 69290 Query 161400 ATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAA 161459 |||||||||||| | |||||||||||||||||||| || | | ||| | || || Sbjct 69291 ATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGT 69350 Query 161460 GTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCAC 161519 || | ||||| ||||||||| || | || |||||| | | |||||||||||||||||| Sbjct 69351 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 69410 Query 161520 GAGCGTAATGCTCACAACTTCCCTCTGGAT 161549 || ||||| || |||||||||||||| ||| Sbjct 69411 GAACGTAACGCGCACAACTTCCCTCTAGAT 69440 Score = 571 bits (632), Expect = 7e-158 Identities = 734/1007 (73%), Gaps = 4/1007 (0%) Strand=Plus/Plus Query 163899 GACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTT 163958 || |||||| | ||||||||||| || || ||| | |||||||| || | | | ||| Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 163959 CCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGG 164018 || || || | ||||||| ||||||| ||| | || ||||| || |||||||| |||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 164019 TACACCCACGGTCTCGCGTCTAGTTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGT 164077 ||||| || || | || ||| |||| | ||||| ||| || ||| | || | ||||| Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 38096 Query 164078 GTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 164137 ||||| ||||| || |||||||||||| | | || | ||||| || ||| | || Sbjct 38097 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 38156 Query 164138 GGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGG 164197 || || || | | | ||| ||| | || ||| | ||| ||||||| || || || || Sbjct 38157 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 38216 Query 164198 ATCTTTCGCTCTGATCGGTTTCATGCTT-CGGCAGTTTGAAATTGCACGTCTTGTAGGTA 164256 | || | | || || ||| || || || || ||||||||||| ||||||||||||| Sbjct 38217 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTA 38275 Query 164257 TCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCC 164316 | |||||||| ||||| ||||| || || || || || || || || || || ||| Sbjct 38276 TTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCT 38335 Query 164317 TTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGA 164376 | || || ||| | || ||| | |||||||||||||| || ||||| || || || | Sbjct 38336 TAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 38395 Query 164377 TCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATA 164436 | ||| ||||||| || ||| | ||||||||||||||||||||||| || || ||||| | Sbjct 38396 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 38455 Query 164437 TGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCG 164496 |||||||||| ||||| || | |||||||| || | | ||| |||||||| ||||| | Sbjct 38456 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 38515 Query 164497 TAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTA 164556 |||| || || || || ||||||||||| | ||||| ||| || ||| || | Sbjct 38516 TAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAA 38575 Query 164557 CTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTG 164616 | ||| ||||| ||||| || ||||| || || ||| | ||||||||||| ||||||| Sbjct 38576 CACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTTG 38635 Query 164617 GTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGG 164676 || ||||||| || || |||||| | || ||||| ||| | |||||||| || | | Sbjct 38636 GTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAG 38695 Query 164677 GACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATT 164736 | | |||||||||||| ||||||| | ||| | ||| | || | | || ||||| | Sbjct 38696 GTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACT 38755 Query 164737 TTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGA 164796 |||| ||||| ||| || | ||||| || ||||| |||||||| || |||||||| || | Sbjct 38756 TTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAA 38815 Query 164797 ACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAAT 164856 | ||| | | || ||||| | | | |||||||| || ||||| ||||| ||| Sbjct 38816 ATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAA 38875 Query 164857 CGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 |||||||| |||||||| ||| | || | || ||||| || ||| Sbjct 38876 ATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 38922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559323217745600