Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq274 280 2e-73 >seq274 Length=21802 Score = 280 bits (310), Expect = 2e-73 Identities = 209/238 (88%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||||| ||||||||||| |||||||||||| | Sbjct 457 GTACAAAGGGCAGGGACGTAATCAATGCGAGCT-GATGACTCGCGTTTACTAGGAATT-C 514 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 |||||| |||| || | ||||||| ||||||||| ||||||||| ||||||| |||| Sbjct 515 CTCGTTCAAGATTAATAGTTGCAATAATCTATCCCTATCACGATGCGCATTTCAA-GATT 573 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||| |||||| ||| |||||||||| ||||||||||||||||||||| Sbjct 574 ACCCGGTCCTTCCGGACAAGGTTATAAACTCGTTGAACGCATCAGTGTAGCGCGCGTGCG 633 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGT-GGCCTA 236 |||||| |||||||||||||||||||||||||||||||| | ||||||| | |||||| Sbjct 634 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCCAACTTCCTTCGGCCTA 691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751950024900