Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq274 295 1e-77 >seq274 Length=21802 Score = 295 bits (326), Expect = 1e-77 Identities = 218/249 (88%), Gaps = 4/249 (2%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 |||||||| |||||||||||||||||||||||||||| | || | |||||||||||||| Sbjct 1349 CTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCTTAGGCCCTGAATACATTAGCAT 1290 Query 131 GGAATAATAGAATAGGACGTGCG-GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||||||||| ||| ||| | | | |||||||||||||||| | | || ||||||| Sbjct 1289 GGAATAATAAGATACGACCTTGGTGGTCTATTTTGTTGGTTTGCACG-CCAAGGTAATGA 1231 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1230 TTAATAGGGATAGTTGGGGGTATTCGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 1171 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | |||||| ||||||||||||||| || ||||||||||||||||||||||| ||||||| Sbjct 1170 TGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAA 1112 Query 310 AGTTAGGGG 318 ||||||||| Sbjct 1111 AGTTAGGGG 1103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915137217280