Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq272 275 3e-71 >seq272 Length=3680 Score = 275 bits (304), Expect = 3e-71 Identities = 237/295 (80%), Gaps = 20/295 (7%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 2902 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATATATGCGAGTACAGGGGTGGCAAACC 2843 Query 468 CGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACCCGTGAGGGT 511 | | ||| ||||||||| || || |||||||| | | ||| Sbjct 2842 CCCGTGCGCAATGAAAGTAAAGGGCTGCTTCGGCGGTCTGAGGTGGGATCTGTCAAAGGT 2783 Query 512 GCACCATCGACCGATCCTGATGTCTTCGGATGGA---TTTGAGTAAGAGCATAGCTGTTG 568 |||||||||||||| | |||| |||||||||| | ||||||| |||||| ||||| Sbjct 2782 GCACCATCGACCGACCATGAT-TCTTCGGATGAAAGGTTTGAGTGTGAGCATTTATGTTG 2724 Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct 2723 GGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGCGAAGCCAGGGGAAACTCTGGTGGA 2664 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| |||| || || |||||||||| ||||| ||||||||||||||||||| Sbjct 2663 GGCTCGTAGCGATTGTGACGTGCAAATCCATCGTGGAATTTGGGTATAGGGGCGA 2609 Score = 179 bits (198), Expect = 2e-42 Identities = 138/164 (84%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||||||||||||||| |||||| |||||||| || ||| |||||||| | ||||| | Sbjct 3307 TTCGACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGG 3248 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||| || ||||||||||||| ||||||| |||| |||||||| |||| ||| Sbjct 3247 CTAAATATCGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACT 3188 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||||||||||||| || | |||||||| ||||||||||| Sbjct 3187 TTGAAAAGAGAGTTAAAGAGTGCCTGAAATTGCTGAAAGGGAAG 3144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079852853000