Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq2348 250 6e-64 seq4378 165 2e-38 >seq2348 Length=90098 Score = 250 bits (276), Expect = 6e-64 Identities = 294/397 (74%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 ||||| ||||||||| |||||||||||||||||||| ||| || |||||| |||| || Sbjct 43521 AAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATGCAAGTGTTATCCG 43580 Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGG 134 || |||||||||||||||||| ||||| |||| |||| | ||| ||||| || Sbjct 43581 GATTTACTGGGCGTAAAGCGTCTGCAGGTGGTTTCTTAAGTCTACTGTTAAATCTTGAGG 43640 Query 135 CTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAAT 194 || ||||| | |||| | | ||| |||| |||| | || || | ||||| Sbjct 43641 CTCAACCTCAAATCTGCAGTAGAAACTAGGAGACTTGAGTATAGTAGGGGTAGAGGGAAT 43700 Query 195 TCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCC 254 | | ||| ||| ||||||||||||||||| | | ||||||| |||||||||||| | Sbjct 43701 TTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATGGCGAAGGCACTCT 43760 Query 255 CCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 314 ||||| || |||||| |||| |||||||| |||||||||| ||||||||||||| Sbjct 43761 ACTGGGCTATTACTGACACTCAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATACCC 43820 Query 315 TGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG--GGATTTACTTCCTTGGTAA 372 ||||||| ||| |||||||| ||| | |||||| | || || | ||| Sbjct 43821 CAGTAGTCCTAGCCGTAAACGATGGATACTCGATGTTGGACGTATCGACCCGTTCAGTAT 43880 Query 373 CGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | |||||||||||| |||| ||||||||||| ||| Sbjct 43881 CTTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 43917 >seq4378 Length=5432 Score = 165 bits (182), Expect = 2e-38 Identities = 235/329 (71%), Gaps = 14/329 (4%) Strand=Plus/Minus Query 16 AGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGG 75 ||| |||||||||| |||||||||||||||||||| ||| |||| || ||||||| ||| Sbjct 2060 AGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAAGACGAAGGGGGCGAGCGTTATCCGG 2001 Query 76 AATTACTGGGCGTAAAGCGTGCGCAGGCGG----TTGTGTAAGACAGGTGTGAAATCCCC 131 ||| ||||||||||||| || || |||| | || ||| || || |||| Sbjct 2000 AATGACTGGGCGTAAAGGGTCCGTAGGCAGCATTTTTTGTTGGAA----GTTAAATAAAA 1945 Query 132 GGGCTTAACCTGGGAATTGCATTTGTGAC---TGCACGACTAGAGTGTGTCAGAGGGGGG 188 ||||||| | || | || | | | | | | |||| || ||| | | Sbjct 1944 AAGCTTAACTTTT---TTCCGCTTCTAAAACGTAAATGCTTTGAGTTTGATAGAAGATAG 1888 Query 189 TGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248 ||||| ||| | || |||| || | |||| |||| ||||| | || ||||||| Sbjct 1887 CAGAATTTCACAAGGAGGGGTGATATCCAGAGATCTGTGAAGGAATATCAGATGCGAAGG 1828 Query 249 CAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAG 308 | || || | |||||||||| | | | |||||||| |||||||||||||||||||| Sbjct 1827 CGGCTATCTAGATCAACACTGACGTTGAGGGACGAAAGCATGGGGAGCAAACAGGATTAG 1768 Query 309 ATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||| |||||||| ||| Sbjct 1767 ATACCCTGGTAGTCCATGCCCTAAAAGAT 1739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289511533440