Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq4379 154 2e-35 seq2348 131 2e-28 >seq4379 Length=14604 Score = 154 bits (170), Expect = 2e-35 Identities = 182/242 (75%), Gaps = 11/242 (5%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| |||||||| |||||||| ||||| | || ||| ||||| Sbjct 6999 CTTACAGCACCGGGCAGGTGTCAGTCCCTATACATCTTCTTAC-GAATTAGCAGAGACCT 7057 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| |||||||||||| ||| | ||||| ||| | | || | || | | Sbjct 7058 GTGTTTTTACTAAACAGTCGCTACCCCCAATTCTGTGCCA--ATCAAAA----AAAATTT 7111 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 | || | | ||| ||||||||||||||||| | | ||||||||||| |||||| Sbjct 7112 CTTTTTTTT--AAT--CACTCCTTCTCCCGAAGTTACAGAGTCATTTTGCCGAGTTCCTT 7167 Query 187 AACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246 |||| | || | ||||||||||||| |||||| | |||||||||||||||| | | Sbjct 7168 TACCATAATTATTTCAAACGCCTTAGTATACTCTACTCGTCCACCTGTGTCGGTTTTCAG 7227 Query 247 TA 248 || Sbjct 7228 TA 7229 >seq2348 Length=90098 Score = 131 bits (144), Expect = 2e-28 Identities = 175/247 (71%), Gaps = 26/247 (11%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || |||||||| ||||| | ||| || Sbjct 46705 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTAC-GACTTAGCGGA 46647 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||||||||||| |||||||||||||| || | ||| ||| | || Sbjct 46646 GACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTGGTTATTGCAACCTTT------TAAA 46593 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 |||||||||||||||||||||||||||| |||||||||| | Sbjct 46592 -------------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGT 46552 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | ||||| | || | ||||||||| ||||||| | ||||||||| ||| Sbjct 46551 TCCTTAGAGAGAGTTCTCTCGCGCCCCTTAGTATACTCTACCCACCTACCTGTGTCAGTT 46492 Query 242 TACGGTA 248 || |||| Sbjct 46491 TATGGTA 46485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694353852780