Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq2348 84.2 2e-14 seq4379 82.4 7e-14 >seq2348 Length=90098 Score = 84.2 bits (92), Expect = 2e-14 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||| |||||||||| ||| || || || ||| || || Sbjct 46610 ACCAGGTCCAAGCGACTGTTTACCAAAAACACAGGTCTCCGCTAAGTCGTAAGACGATGT 46669 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || ||| |||||||||||| ||||||||||||||| Sbjct 46670 ATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 46705 >seq4379 Length=14604 Score = 82.4 bits (90), Expect = 7e-14 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| |||||| || || ||| || |||||||| ||| Sbjct 7078 GCGACTGTTTAGTAAAAACACAGGTCTCTGCTAATTCGTAAGAAGATGTATAGGGACTGA 7019 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 | |||||||||||| | ||| |||| Sbjct 7018 CACCTGCCCGGTGCTGTAAGATTAA 6994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476768313660