Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq2348 277 5e-72 seq4379 214 5e-53 >seq2348 Length=90098 Score = 277 bits (306), Expect = 5e-72 Identities = 307/410 (75%), Gaps = 31/410 (8%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | || ||||||| ||||||| ||||||||| | |||||| Sbjct 46887 GCATCTTCACAGACAGGTCTATTTCACCGAGTCTCTCTCCGAGACAGCGTCCAAATCGTT 46828 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46827 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 46768 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCC-CAT 191 | ||||||||||||||| ||||||||||| | | ||||| || | || |||| | | Sbjct 46767 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTAATTAGCTTTGCTTACGCGAACCAACGT 46708 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 | ||||||||||||||| |||||||||||| ||| |||| || ||| || || || Sbjct 46707 CT-TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTACGACTTAGCG 46649 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTT 311 ||| |||||||||| ||||||||||| | |||||| | || Sbjct 46648 GAGACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTGGT-TATT---------------- 46606 Query 312 ACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTG 371 |||| |||| | | ||| | ||||||||||||||||||| || ||||| Sbjct 46605 -----GCAA--CCTT-----TTAAAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTG 46558 Query 372 CCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCA 421 || |||||||| |||||||||| || |||| |||| ||||||||| Sbjct 46557 CCGAGTTCCTTAGAGAGAGTTCTCTCGCGCCCCTTAGTATACTCTACCCA 46508 >seq4379 Length=14604 Score = 214 bits (236), Expect = 5e-53 Identities = 208/269 (77%), Gaps = 9/269 (3%) Strand=Plus/Plus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||||| ||||| |||||||||||||||| | | ||| ||||||||| | ||| Sbjct 6819 CTGCATCTGCACAGATATTTCAATTTCACTGAATTTATGGTAGAGACAGCGGGGAAGTCG 6878 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 6879 TTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGT 6938 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCA 190 | ||||| |||||||||||| ||| ||| | || || |||| | Sbjct 6939 CAGAGTTACAGCCGCCGTTTACTGGGACTTAAGTTAAAGGC---------CAAAACCTCT 6989 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 | |||| ||| | |||||||||||| |||| |||||||| || ||| || || || Sbjct 6990 CCCTTTAATCTTACAGCACCGGGCAGGTGTCAGTCCCTATACATCTTCTTACGAATTAGC 7049 Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGC 279 |||| ||||||||||| ||||||||||| Sbjct 7050 AGAGACCTGTGTTTTTACTAAACAGTCGC 7078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260713509120