Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq2348 365 1e-98 seq4379 269 6e-70 >seq2348 Length=90098 Score = 365 bits (404), Expect = 1e-98 Identities = 296/358 (83%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||||||||||| | ||||||| | |||||||||| Sbjct 46887 GCATCTTCACAGACAGGTCTATTTCACCGAGTCTCTCTCCGAGACAGCGTCCAAATCGTT 46828 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46827 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 46768 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||| || ||||||| ||| |||| | || | | ||| | Sbjct 46767 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTAATTAGCTTTGCTTACGCGAACCAACGT 46708 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 | |||||||||| |||| |||||||||||||| || |||||||||||| ||||||||| | Sbjct 46707 CTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTACGACTTAGCGG 46648 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAG 306 | ||||||||||||||||||||||||||||| ||| | ||| ||| | | || Sbjct 46647 AGACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTGGTTATTGCAACCT----TTTAAAG 46592 Query 307 GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||||| ||||||||||| |||||||||||||||||| | ||||||| Sbjct 46591 GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTCTC 46534 >seq4379 Length=14604 Score = 269 bits (298), Expect = 6e-70 Identities = 280/369 (76%), Gaps = 26/369 (7%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||| ||| | ||| ||||||||| || | ||| || ||||||| | || ||||| Sbjct 6821 GCATCTGCACAGATATTTCAATTTCACTGAATTTATGGTAGAGACAGCGGGGAAGTCGTT 6880 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 6881 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTCA 6940 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||| |||||||||||||||| |||||||| | || | | ||| ||| Sbjct 6941 GAGTTACAGCCGCCGTTTACTGGGACTTAAGTTAAAGGC--CAA-------AACCTCTCC 6991 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 | |||| ||| |||||||||||||| ||||| |||||||||| |||| ||| ||||||| Sbjct 6992 CTTTAATCTTACAGCACCGGGCAGGTGTCAGTCCCTATACATCTTCTTACGAATTAGCAG 7051 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGA--- 303 | |||||||||||| |||||||||||| || ||||| | ||| ||| | | Sbjct 7052 AGACCTGTGTTTTTACTAAACAGTCGCTACCCCCAATTCTGT---GCCAATCAAAAAAAA 7108 Query 304 -----------CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | ||| ||||||||| ||||||| | |||||||||||||||||||| Sbjct 7109 TTTCTTTTTTTTAATCACTCCTTCTCCCGAAGTTACAGAGTCATTTTGCCGAGTTCCTTT 7168 Query 353 ACAATAGTT 361 || ||| || Sbjct 7169 ACCATAATT 7177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062327119360