Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2348 361 2e-97 seq4378 248 3e-63 >seq2348 Length=90098 Score = 361 bits (400), Expect = 2e-97 Identities = 382/498 (77%), Gaps = 25/498 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| |||||||||||||||||| || Sbjct 43915 TACGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGGAT 43974 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCC-TCTGACCCCT 119 |||||||||||||| ||||||||||||||||||||| ||| | | | | Sbjct 43975 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGCTAGAAGTGTTGGTTTT 44034 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 || || | ||| |||| | | | ||||||| ||||||| |||||||| Sbjct 44035 CT---GAAA-AGGATTCCTTATTCCGCTTCT-----ACAGGTGGTGCATGGCTGTCGTCA 44085 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 44086 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTTTTAGTTC 44145 Query 240 CCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 || ||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 44146 -------TA--TTG-----TCTAAAAAGACTGCCGGTGACAAACCGGAGGAAGGTGAGGA 44191 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 ||||||||| ||||||||||||||| |||||||||||||| ||||||||| || | Sbjct 44192 CGACGTCAAGTCATCATGCCCCTTACACCCTGGGCTACACACGTCCTACAATGGGTAAGA 44251 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 ||| | || || ||||||| |||| |||| ||| || || ||| | |||| Sbjct 44252 CAATAAGTTGCAAATTCGCGAGGATAAGCTAATCTTTGAAACTTACTCCAAGTACAGATT 44311 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCT 478 | || |||||||||| || |||||| |||||||||||||||||| | ||||| | | Sbjct 44312 GCAGGCTGCAACTCGCCTGCATGAAGGTGGAATCGCTAGTAATCGCTGGTCAGCTACACA 44371 Query 479 ACGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 44372 GCGGTGAATCCGTTCCCG 44389 >seq4378 Length=5432 Score = 248 bits (274), Expect = 3e-63 Identities = 360/503 (72%), Gaps = 28/503 (6%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||| |||||||||| ||||||||||||||||||||| || ||||| |||||||||| Sbjct 1675 TACGATCGCAAGGTTGGAACTCAAAGGAATTGACGGGGGCCTATACAAGTGGTGGAGCAT 1616 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCT-GACCCCT 119 |||||||||| ||| ||||| |||||||||| ||||||||| || Sbjct 1615 GTGGTTTAATGCGATAATACGCGCGAAACCTTACCAGTTCTTGACATAAAAAAGAAAAAG 1556 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTG--ACAGGTGATGCATGGTTGTCGT 177 | || | || ||| | ||| | ||||||| ||||||| |||||| Sbjct 1555 TTTGAAAAAGCAATTTT-----------AAAGATTTTTACAGGTGCTGCATGGCTGTCGT 1507 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGC-AACGAGCGCAACCCTTAAGCTTAG 236 |||||||||||||||||||| |||||| ||| |||| ||| ||||| | || | Sbjct 1506 AAGCTCGTGTCGTGAGATGTTAGGTTAACTCCTTTTAACGGGCGAAACCCCTTTTTTTCG 1447 Query 237 TTGCCA--TCATTAAGTTGG----GCACTCTAAGTTGACTGCCGG----TGACAAACCGG 286 |||| | | ||| || ||||||||| ||||| | || ||| Sbjct 1446 TTGCTACTTAATTTTATTTTTAAAGCACTCTAAAAAAACTGCTCCCTTTTTTTAATTCGG 1387 Query 287 AG--GAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTG 344 || ||||||||||| |||||||| || | ||| ||||||||| ||||||||||||||| Sbjct 1386 AGAGGAAGGTGGGGATGACGTCAAGTCCTTATGGCCCTTATGAACTGGGCTACACACGTG 1327 Query 345 CTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTG 404 ||||||||| || |||| | || || | | | | || | |||| |||| || Sbjct 1326 CTACAATGGTAAAGACAATAAGAAGTGATAGGGTAACCTAAAACCAATCTT-TAAACTTT 1268 Query 405 TTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCG 464 || |||||||||||| | |||||||||| | |||||||| ||||||| |||||||||| Sbjct 1267 ATCAAAGTTCGGATTGTGGACTGCAACTCGTCCATATGAAGGTGGAATCACTAGTAATCG 1208 Query 465 TAGATCAGCATGCTACGGTGAAT 487 | ||||||||| | |||||||| Sbjct 1207 CACATCAGCATGTTGCGGTGAAT 1185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503896825600