Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04-
08] 6,860 sequences; 25,618,953 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq2348 217 3e-54
seq4379 111 3e-22
>seq2348
Length=90098
Score = 217 bits (240), Expect = 3e-54
Identities = 185/228 (81%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171
||||| | ||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 47074 GGACACTCCCAGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCG 47133
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231
| ||||| | |||||| | |||| |||| | || | |||| |||||||||||| |
Sbjct 47134 CACAAAGGTTTCCTCAGATCGGATAGAAATCGATCGAAGAGTGTAAAGGCAAAAGGAAGC 47193
Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291
|||||||||| || |||||| ||||| |||||||||||| |||| ||||||| || |
Sbjct 47194 TTGACTGCGAGACGTACAAGTCAAGCAGAGACGAAAGTCGGTCTTAGTGATCCGACGATC 47253
Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|||| ||||| || |||||||| ||||||||||| ||| || ||||||
Sbjct 47254 CTGAGTGGAAAGGTCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 47301
>seq4379
Length=14604
Score = 111 bits (122), Expect = 3e-22
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCA-AAGATACCCT 185
|| ||||||||||||||||| ||||| ||| ||||||||||| | ||| || ||
Sbjct 6659 GGTAGTTTGACTGGGGCGGTGACCTCCTAAAAAGTAACGGAGGTATTTACAAGGTAGGCT 6600
Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245
|| | || || | || | | | |||| || |||| ||| || |||||||| | |
Sbjct 6599 CA-TTAGGTTG--ATCCCTAAGAAGAGTGTAATGGCATAAGCCTGCTTGACTGCAAGATT 6543
Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305
||| || ||||| |||||||| | | || |||||||| ||| ||| ||||| | |
Sbjct 6542 TACAAATCAAGCAGAAACGAAAGTTGAACATAGTGATCCGGTGGTTCTGTGTGGAAAGAC 6483
Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| |||||| | ||||||||| ||| || ||||||
Sbjct 6482 CATCGCTCAATGGATAAAAGGTACGCTAGGGATA 6449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982332607360
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |