Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq4379 132 5e-29 seq2348 104 3e-20 >seq4379 Length=14604 Score = 132 bits (146), Expect = 5e-29 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | ||||||| |||||| ||| |||| | |||||||||||| Sbjct 6792 GGGTCTTTCCGTCTAGCTGTAGGTAATCTGCATCTGCACAGATATTTCAATTTCACTGAA 6851 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | ||| ||||||| |||||||||| ||||||||||||||||||||| Sbjct 6852 TTTATGGTAGAGACAGCGGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGA 6911 Query 145 CAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||| ||||||| Sbjct 6912 CAAGGAATTTCGCTACCTTTGGACCGT 6938 >seq2348 Length=90098 Score = 104 bits (114), Expect = 3e-20 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || || | || |||||||||| || | | ||||||| ||| Sbjct 46916 GGGTCTTTCTGTCCAGGTGCAGGAAGTCCGCATCTTCACAGACAGGTCTATTTCACCGAG 46857 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 46856 -TCTCTCTCCGAGACAGCGTCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 46798 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 46797 ACAAGGAATTTCGCTACCTTAGGACCGTTA 46768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547163635140