Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2348 248 3e-63 seq4379 114 5e-23 >seq2348 Length=90098 Score = 248 bits (274), Expect = 3e-63 Identities = 342/469 (73%), Gaps = 21/469 (4%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| |||||| ||||||||||||||||||||| | | || ||||||| ||||| Sbjct 45716 CGCTGCGCCTAAACACATTTCGGGGAGAACCAGCTAGCTCCGGATTCGATTGGCATTTCA 45657 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| || | |||||||| | ||| |||||| ||||||| | Sbjct 45656 CCCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCAGTTCGGACCTCCACTTAG 45597 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCG--T 313 | ||||| |||||| |||| ||||| ||||||| | ||||||||| | | | Sbjct 45596 TTTTACCTAAGCTTCATCCTGGTCATGGTTAGATCATCCGGGTTCGGGTCTGTACCTAAT 45537 Query 314 GCCACTCATACGCCCTAT-TCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACC 372 | || | ||| | | || ||||||||| ||| |||| | | | |||||| Sbjct 45536 GACATTG---CGCTCGTTATCAAGCTCGCTTTCACTATGGCTTCGT-ATTC---TTAACC 45484 Query 373 TCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA--CCTGGTA 430 ||| | | ||| |||| |||||||||||||| |||||||| |||| | || | Sbjct 45483 CCGCCATTAGATACAAG-TCGCCGGCTCATTCTTCAACAGGCACGCAGTCAGGCTTGACA 45425 Query 431 CCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490 || || | |||| ||| | |||||||| |||||||| || || ||||||| Sbjct 45424 ACTCGTAGCC-CTTCTGCTGC------TTGTAGGCTTCTGGTTTCATGTTCT-TTTCACT 45373 Query 491 CCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAG 550 |||| || ||||| ||||||||||||||||||||||||| || | |||||||||| || Sbjct 45372 CCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCATTCAG 45313 Query 551 GAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | ||||||| ||| |||||||| | |||||||||| ||||||| Sbjct 45312 TAATATTTAGCCTTGCAAGGTGGTCCTTGCGGATTCACACGGAATTTCA 45264 >seq4379 Length=14604 Score = 114 bits (126), Expect = 5e-23 Identities = 127/169 (75%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 || ||||| |||||| ||| ||||||||||| | |||||||||| |||||||||||||| Sbjct 7875 ACTTAAATAGATTTCGCGGAAAACCAGCTATCTCTAAGTTTGATTAGCCTTTCACCCCTA 7934 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTAC 261 ||||| ||||||| | |||||||| || | ||||||||||||| | || | Sbjct 7935 ACCACAAATCATCCCAGTATTTTTCAACATACACGAGTTCGGTCCTCCAATTAATGTTTC 7994 Query 262 C---CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTT 307 | ||||||||| ||| | |||||||||| | ||||||| || Sbjct 7995 CATTAAATTTTCAACCTGTTCATAGTTAGATCACTTAGTTTCGGGTTTT 8043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817475312640